CX077145

Overview
NameCX077145
Unique NameCX077145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 5.994e-46
Identity = 103/231 (44.59%), Postives = 139/231 (60.17%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            AG H++ GAK+VII+AP+  AD P +V+GVN + YD+ +  IVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK     +D+    ++A+EGPLKGIL   +  +VS DF  +  SST D+   + + D  VK+++WYDNE+GYS RVVDL   +A+K
Sbjct:  106 AGAHLKGGAKRVIISAPS--ADAPMFVMGVNHEKYDNSL-KIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAA-KYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASK 332          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 5.994e-46
Identity = 103/231 (44.59%), Postives = 138/231 (59.74%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            AG H++ GAK+VII+AP+  AD P +V+GVN + YD+ +  IVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK     +D+    ++A+EGPLKGIL   +  +VS DF     SST D+   + + D  VK+++WYDNE+GYS RVVDL   +A+K
Sbjct:  106 AGAHLKGGAKRVIISAPS--ADAPMFVMGVNHEKYDNSL-KIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAA-KYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASK 332          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.994e-46
Identity = 105/231 (45.45%), Postives = 137/231 (59.31%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            AG H++ GAK+VII+AP+  AD P +V+GVN + YD  +  IVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK     +D+    + AAEGPLKGIL   +  +VS DF     SST D+   + + D+ VK+V+WYDNE+GYS RVVDL   +A+K
Sbjct:  106 AGAHLKGGAKRVIISAPS--ADAPMFVMGVNHEKYDKSL-KIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPA-KYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASK 332          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 5.994e-46
Identity = 105/231 (45.45%), Postives = 137/231 (59.31%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            AG H++ GAK+VII+AP+  AD P +V+GVN + YD  +  IVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK     +D+    + AA+GPLKGILA  +  +VS DF     SST D+   + + D  VK+V+WYDNE+GYS RVVDL   +A+K
Sbjct:  106 AGAHLKGGAKRVIISAPS--ADAPMFVMGVNHEKYDKSL-KIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPA-KYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASK 332          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 7.828e-46
Identity = 103/231 (44.59%), Postives = 138/231 (59.74%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            AG H++ GAK+VII+AP+  AD P +V+GVN + YD+ +  IVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK     +D+    ++A+EGPLKGIL   +  +VS DF     SST D+   + + D  VK+++WYDNE+GYS RVVDL   +A+K
Sbjct:  106 AGAHLKGGAKRVIISAPS--ADAPMFVMGVNHEKYDNSL-KIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAA-KYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASK 332          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 184.111 bits (466), Expect = 7.828e-46
Identity = 103/231 (44.59%), Postives = 138/231 (59.74%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            AG H++ GAK+VII+AP+  AD P +V+GVN + YD+ +  IVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK     +D+    ++A+EGPLKGIL   +  +VS DF     SST D+   + + D  VK+++WYDNE+GYS RVVDL   +A+K
Sbjct:  106 AGAHLKGGAKRVIISAPS--ADAPMFVMGVNHEKYDNSL-KIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPA-KYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASK 332          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.828e-46
Identity = 105/228 (46.05%), Postives = 137/228 (60.09%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLV 698
            A KHIQAGAK+V+I+AP KG DIPT+V+GVN K ++ E   ++SNASCTTNCLAP  KV+ +  GI +G +TT H+ T  Q                   NI+P STGAAKAV+L LP+LKGKL G+A R               + K  T +D+  A ++A+E  LKGIL   D  +VS DF  S+ SS  D+   + + D   K+VAWYDNE GY+ R+VDL   V
Sbjct:  105 AEKHIQAGAKRVLISAPGKG-DIPTFVMGVNHKTFNPEKDFVISNASCTTNCLAPIAKVLLDNFGITEGLMTTVHAATATQLVVDGPSKKDWRGGRGCLQNIIPASTGAAKAVTLCLPELKGKLTGMAFRVPIEDVSVVDLTVRLD-KSTTYDDICKAMKQASETDLKGILDYTDEQVVSSDFIGSEYSSIFDALAGIALNDRFFKLVAWYDNETGYATRIVDLLEYV 330          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.828e-46
Identity = 106/232 (45.69%), Postives = 137/232 (59.05%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHLVATK 707
            A  H++ GAKKVII+AP+K  D P +VVGVNEK Y  ++ ++VSNASCTTNCLAP  KV+ +  GIV+G +TT HS T  Q                   NI+P+STGAAKAV  VLP L GKL G+A R                K+  + +++ AA ++ +EG LKGIL   +  +VS DF     SS  D+   + +    VK+VAWYDNEWGYS RVVDL  H+ A K
Sbjct:  110 AAAHLKGGAKKVIISAPSK--DAPMFVVGVNEKTYTPDI-DVVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTVDVSVVDLTVTLAKEA-SYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDLIRHMAAAK 337          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 7.828e-46
Identity = 104/229 (45.41%), Postives = 136/229 (59.39%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGAD-IPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 686
            D  GA KH+QAGA++VII+AP K  D + T +VGVN   +D     IVSNASCTTNCLAP  KV+++  G+ +G +TT H+ T  Q                   NI+P+STGAAKAV+LVLP+LKGKL G+A R                K   + +++ AA ++A+EG L GIL   D  +VS DF+    SS  D+   + +  +  KVVAWYDNEWGYS RVVDL
Sbjct:  103 DSEGASKHLQAGARRVIISAPTKDPDRVRTLLVGVNHDLFDPSKDLIVSNASCTTNCLAPIAKVINDNFGLTEGLMTTVHAMTATQPTVDGPSKKDWRGGRGAAQNIIPSSTGAAKAVALVLPELKGKLTGMAFRVPTPDVSVVDLTFKTAK-ATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDL 330          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.335e-45
Identity = 103/231 (44.59%), Postives = 137/231 (59.31%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            AG H+Q GAK+VII+AP+  AD P +V+GVN + YD+ +  IVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK     +D+    ++A+EGPLKGIL   +  +VS D      SST D+   + + D  VK+++WYDNE+GYS RVVDL   +A+K
Sbjct:  108 AGAHLQGGAKRVIISAPS--ADAPMFVMGVNHEKYDNSL-KIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKAA-KYDDIKKVVKQASEGPLKGILGYTEHQVVSSDLNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASK 334          
The following BLAST results are available for this feature:
BLAST of CX077145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3P_RABIT5.994e-4644.59Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_FELCA5.994e-4644.59Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_COTJA5.994e-4645.45Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_COLLI5.994e-4645.45Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P_SPECI7.828e-4644.59Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_PIG7.828e-4644.59Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_CHLPN7.828e-4646.05Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3PC_CRAPL7.828e-4645.69Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_ANASP7.828e-4645.41Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_PONAB1.335e-4544.59Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_54G05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54G05-M10-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077145 ID=CX077145; Name=CX077145; organism=Citrus sinensis; type=EST; length=807bp
TTGTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCAAGAAA
GTTATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTATGTCGT
TGGAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGTGAGCA
ATGCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCATGGAT
GAAGAATTGGGGATTGTCAAGGGAGCGATTACAACTACTCACTCCTACAC
TGGAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAGAGCGA
GAGCTGCAGCGTTGAACATTGTCCCAACGAGCACAGGTGCCGCCAAGGCT
GTTTCTCTTGTGCTGCCACAGCTCAAAGGCAAGCTCAACGGCATTGCGCT
CCGTGTGCCAACACCAAATGTTTCAGTCGTTGACCTTGTTGTGAACGTTG
AGAAAAAGGGTATTACAGCAGAAGATGTTAATGCAGCCTTCAGAAAGGCT
GCTGAGGGGCCACTGAAGGGCATATTGGCCGTCTGCGATGTTCCACTGGT
GTCGGTGGACTTCCGATGCTCTGATGTTTCCTCCACCATTGACTCTTCAT
TGACCATGGTCATGGGTGATGATATGGTCAAGGTTGTTGCCTGGTACGAC
AATGAATGGGGATACAGCCAAAGGGTTGTCGATTTGGCGCATTTGGTTGC
AACCAAGTGGCCAGGCGTGGCTGCAGGCGGAAGCGGAGACCCATTGGAGG
ATTTCTGCCAGACAAACCCTGCTGATGAGGAGTGCAAAGTTTATGAAGCT
TAAATTC
back to top