CX077059

Overview
NameCX077059
Unique NameCX077059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 48/127 (37.80%), Postives = 77/127 (60.63%), Query Frame = -2 
Query:  299 GWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 679
            GWL TGD+  +D++GF+ IVDR K++I   G+ V P E+E +++ HP + + A V  P   +G+    +VV++  S L+E  ++ F  RQ+  YK  + V F   +PK+  GKILR++L   A  K+
Sbjct:  432 GWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPS-LTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKV 557
[Close]
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_SHISS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella sonnei (strain Ss046) GN=caiC PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = -2 
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            +++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  395 EADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516
[Close]
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSE (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SE11) GN=caiC PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = -2 
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            +++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  395 EADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516
[Close]
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_ECOHS (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O9:H4 (strain HS) GN=caiC PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = -2 
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            +++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  395 EADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516
[Close]
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_ECO55 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = -2 
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            +++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  395 EADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516
[Close]
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_ECO27 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 49/122 (40.16%), Postives = 69/122 (56.56%), Query Frame = -2 
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            +++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K +  +     +P+N SGKI+RK+L
Sbjct:  395 EADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVLSYLEIRKDLPRNCSGKIIRKNL 516
[Close]
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_ECO24 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = -2 
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            +++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  395 EADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516
[Close]
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: MENE_LACLA (2-succinylbenzoate--CoA ligase OS=Lactococcus lactis subsp. lactis GN=menE PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 44/115 (38.26%), Postives = 76/115 (66.09%), Query Frame = -2 
Query:  323 TGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 667
            TGD+ Y+D DGF+++++R K++I   G  + P E+E L+ + P+I + A+V  PD + GQ P+ +V       +S+ ++ +F+  ++A YKR + + F+  +PKN SGKILRK+L
Sbjct:  339 TGDIGYLDTDGFLYLLNRRKDIIISGGENIYPKEIEDLVYSLPEIKECALVAKPDAKWGQVPILFV----SGNISQEKLENFLTEKLAKYKRPQSITFMDELPKNASGKILRKEL 449
[Close]
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_PROSL (Probable crotonobetaine/carnitine-CoA ligase OS=Proteus sp. (strain LE138) GN=caiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = -2 
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            + +GWL TGD  Y DD+GF + VDR   +IK  G  V   E+E ++ +HPKI D AV+  PD    +   A+VV   G  LSE     F  + +A +K    V F   +P+N SGK+++K L
Sbjct:  396 EPDGWLHTGDYGYRDDEGFFYFVDRSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVDGETLSEEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKKHL 517
[Close]
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_PROMH (Probable crotonobetaine/carnitine-CoA ligase OS=Proteus mirabilis (strain HI4320) GN=caiC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = -2 
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            + +GWL TGD  Y DD+GF + VDR   +IK  G  V   E+E ++ +HPKI D AV+  PD    +   A+VV   G  LSE     F  + +A +K    V F   +P+N SGK+++K L
Sbjct:  396 EPDGWLHTGDYGYQDDEGFFYFVDRSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVDGETLSEEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKKHL 517
The following BLAST results are available for this feature:
BLAST of CX077059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 337
Match NameE-valueIdentityDescription
LCFA_ECO571.815e-1837.80Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
CAIC_SHISS1.815e-1840.16Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECOSE1.815e-1840.16Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOHS1.815e-1840.16Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO551.815e-1840.16Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO271.815e-1840.16Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO241.815e-1840.16Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
MENE_LACLA2.370e-1838.262-succinylbenzoate--CoA ligase OS=Lactococcus lact... [more]
CAIC_PROSL2.370e-1839.34Probable crotonobetaine/carnitine-CoA ligase OS=Pr... [more]
CAIC_PROMH2.370e-1839.34Probable crotonobetaine/carnitine-CoA ligase OS=Pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54A12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54A12-A24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077059 ID=CX077059; Name=CX077059; organism=Citrus sinensis; type=EST; length=689bp
TCAGCACAATTATATAGATTTCCAATTCTCAAACCCGAGCATGCCGGAGT
TCCAAATTGTCTAAAACATGATCCCTCCTACAAATGCACAAATGTGGCCC
CTGTTTATTCATATAGATCATTACAAGAAAAACAAAACATCTAAATTTCA
GTGACAAGGCAAAATATATATAAACCAGCATAACGGATTTTAGTACAGCA
TAATTTTGCTACAGGCATAAACAAGATGTTGAATGAGAAATAGAACCACT
ACTTCTCTGTTTGAGGCCCTCTCTTTGGGCAAAAGCCCCAGGCATTCAAA
GTTTGGATGTCGCAAGCTTGATGAGATCCTTCCTGAGAATCTTGCCTGAT
GGATTCTTGGGTATTGAAGCTACAAATGCCACTCTCCGAACCCTCTTGTA
TGGGGCAACCTGTCTTGCTACAAAATCCATGACTTCATTCTCTGATAATC
GACTTCCAGCTTCCCGTACCACATATGCCATGGGATATTGCCCAGCCTCC
TTGTCAGGAAATGGTACGACAGCAGCATCAGAAATTTTTGGATGAGTTAG
TAGCAAAGCCTCTAGTTCTGCTGGAGGGACCTGATAACCTTTGTACTTGA
TCAGCTCCTTTAATCGATCAACAATAAAAATGAAGCCATCATCATCAATG
TAGCAGAGATCTCCAGTTCTTAACCATCCTTCAGAATCA
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