CX077059

Overview
NameCX077059
Unique NameCX077059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_ECO45 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.043e-18
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = -2
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            +++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  395 EADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_SHIDS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiC PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = -2
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            +++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++ THPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  395 EADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKVLPRNCSGKIIRKNL 516          
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: ALKK_PSEOL (Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = -2
Query:  323 SEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 685
            S+GW  TGD+  ID DGF+ I DR K++IK  G  +   ELE++ + HP I DAAV+    ++  + P+   V+   S L+  EV ++ A +VA ++      FV  +P+N +GKIL+  L
Sbjct:  409 SDGWFSTGDVATIDSDGFMTICDRAKDIIKSGGEWISTVELESIAIAHPHIVDAAVIAARHEKWDERPLLIAVKSPNSELTSGEVCNYFADKVARWQIPDAAIFVEELPRNGTGKILKNRL 529          
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: MENE_BACA2 (2-succinylbenzoate--CoA ligase OS=Bacillus amyloliquefaciens (strain FZB42) GN=menE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 48/127 (37.80%), Postives = 75/127 (59.06%), Query Frame = -2
Query:  299 GWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 679
            GW +TGDL Y+DD+GF++++DR  +LI   G  + PAE+EA LL HP +++A V    D + G+ P A++V    S +S  E+  F   ++A YK       V  +P+N S K++R  L +L   +L
Sbjct:  362 GWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIYPAEVEAALLAHPAVAEAGVSGSEDPKWGKVPHAFLV--LTSSVSSEELTAFCRERLAKYKIPAAFFEVDGLPRNASNKLMRHRLNELRKGEL 486          
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLU (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            +++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++  HPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  395 EADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLC (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiC PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            +++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++  HPKI D  VV   D    +   A+VV   G  LSE E   F  + +A +K    +     +P+N SGKI+RK+L
Sbjct:  395 EADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNL 516          
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: LCFA_YERPE (Long-chain-fatty-acid--CoA ligase OS=Yersinia pestis GN=fadD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 45/120 (37.50%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  323 EGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 682
            +GWL TGD+  +D+DGF+ IVDR K++I   G+ V P E+E ++  H K+ ++AV+  P++ +G+    +VV+   S L+  E++    R +  YK  + V F   +PK+  GKILR++L
Sbjct:  431 DGWLATGDIATMDEDGFLRIVDRKKDMILVSGFNVYPNEIEEVVALHAKVLESAVIGVPNEVSGEAVKVFVVKNDAS-LTPEELLTHCRRYLTGYKVPKIVEFRDELPKSNVGKILRREL 549          
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: LCFA_SALTY (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 45/128 (35.16%), Postives = 77/128 (60.16%), Query Frame = -2
Query:  299 EGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 682
            +GWL TGD+  +D+DGF+ IVDR K++I   G+ V P E+E +++ H  + + A V  P   +G+    +VV++    L+++ ++ F  R +  YK  ++V F   +PK+  GKILR++L   A  K+
Sbjct:  431 DGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKK-DPALTDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDEARGKV 557          
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: LCFA_SALTI (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 45/128 (35.16%), Postives = 77/128 (60.16%), Query Frame = -2
Query:  299 EGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 682
            +GWL TGD+  +D+DGF+ IVDR K++I   G+ V P E+E +++ H  + + A V  P   +G+    +VV++    L+++ ++ F  R +  YK  ++V F   +PK+  GKILR++L   A  K+
Sbjct:  431 DGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKK-DPALTDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDEARGKV 557          
BLAST of CX077059 vs. ExPASy Swiss-Prot
Match: CAIC_ESCF3 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiC PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  323 DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 688
            +++GWL TGD  Y D++GF + VDR   +IK  G  V   ELE ++  HPKI D  VV   D    +   A+VV   G  LSE E  +F  + +A +K    +     +P+N SGKI+RK L
Sbjct:  395 EADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGEILSEEEFFNFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKAL 516          
The following BLAST results are available for this feature:
BLAST of CX077059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 337
Match NameE-valueIdentityDescription
CAIC_ECO454.043e-1840.16Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_SHIDS5.280e-1840.16Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
ALKK_PSEOL5.280e-1838.02Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas... [more]
MENE_BACA21.176e-1737.802-succinylbenzoate--CoA ligase OS=Bacillus amyloli... [more]
CAIC_ECOLU1.176e-1739.34Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOLC1.176e-1739.34Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
LCFA_YERPE2.006e-1737.50Long-chain-fatty-acid--CoA ligase OS=Yersinia pest... [more]
LCFA_SALTY2.006e-1735.16Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_SALTI2.006e-1735.16Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
CAIC_ESCF32.006e-1739.34Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54A12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54A12-A24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077059 ID=CX077059; Name=CX077059; organism=Citrus sinensis; type=EST; length=689bp
TCAGCACAATTATATAGATTTCCAATTCTCAAACCCGAGCATGCCGGAGT
TCCAAATTGTCTAAAACATGATCCCTCCTACAAATGCACAAATGTGGCCC
CTGTTTATTCATATAGATCATTACAAGAAAAACAAAACATCTAAATTTCA
GTGACAAGGCAAAATATATATAAACCAGCATAACGGATTTTAGTACAGCA
TAATTTTGCTACAGGCATAAACAAGATGTTGAATGAGAAATAGAACCACT
ACTTCTCTGTTTGAGGCCCTCTCTTTGGGCAAAAGCCCCAGGCATTCAAA
GTTTGGATGTCGCAAGCTTGATGAGATCCTTCCTGAGAATCTTGCCTGAT
GGATTCTTGGGTATTGAAGCTACAAATGCCACTCTCCGAACCCTCTTGTA
TGGGGCAACCTGTCTTGCTACAAAATCCATGACTTCATTCTCTGATAATC
GACTTCCAGCTTCCCGTACCACATATGCCATGGGATATTGCCCAGCCTCC
TTGTCAGGAAATGGTACGACAGCAGCATCAGAAATTTTTGGATGAGTTAG
TAGCAAAGCCTCTAGTTCTGCTGGAGGGACCTGATAACCTTTGTACTTGA
TCAGCTCCTTTAATCGATCAACAATAAAAATGAAGCCATCATCATCAATG
TAGCAGAGATCTCCAGTTCTTAACCATCCTTCAGAATCA
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