EY702149

Overview
NameEY702149
Unique NameEY702149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.787e-36
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 287
            YLIR+GWIPC+EF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E  K YP  F RIIGFDN RQVQCISF+  KP G
Sbjct:   88 YLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.787e-36
Identity = 64/89 (71.91%), Postives = 78/89 (87.64%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  +P
Sbjct:   91 YLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.669e-35
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISFIA KP
Sbjct:   90 YLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.669e-35
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISFIA KP
Sbjct:   89 YLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.180e-35
Identity = 62/89 (69.66%), Postives = 75/89 (84.27%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:   93 YLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.180e-35
Identity = 62/89 (69.66%), Postives = 75/89 (84.27%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:   89 YLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.180e-35
Identity = 62/89 (69.66%), Postives = 75/89 (84.27%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:   90 YLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.180e-35
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YL+R+ W+PC+EF  E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:   85 YLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.847e-35
Identity = 64/89 (71.91%), Postives = 77/89 (86.52%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCT A QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   91 YLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.719e-35
Identity = 63/89 (70.79%), Postives = 74/89 (83.15%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCISFIA KP
Sbjct:   87 YLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
The following BLAST results are available for this feature:
BLAST of EY702149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
RBS_ZANAE9.787e-3673.63Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FRIAG9.787e-3671.91Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS3_MESCR1.669e-3570.79Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_MESCR1.669e-3570.79Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_MESCR2.180e-3569.66Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_MESCR2.180e-3569.66Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_MESCR2.180e-3569.66Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_LEMGI2.180e-3574.16Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS5_FRIAG2.847e-3571.91Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS2_MESCR3.719e-3570.79Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-F04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702149 ID=EY702149; Name=EY702149; organism=Citrus sinensis; type=EST; length=607bp
CTCAAGGAAATCATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAA
TTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGG
ATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGT
GCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAA
TACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAAGT
GCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCA
ATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGT
AACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAATT
TGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTCCCC
GACTTTGGCTTCTTTTTTTTTTTTTTATATATATTTTAATAATTGAATCC
TTTGTTTTCAGTTTCATTAATCTGGGTCTCGGATGTTCAGTTTAATGAGT
GAGAATTACTGGAATTAAAAGAGTAGTTTTATGATTCTTGCCAAAAAAAA
AAAAAAA
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