EY702149

Overview
NameEY702149
Unique NameEY702149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.285e-35
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 3
Query:   12 HYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            +YL+  GW+PCLEFE+    VYRE++KSPGYYDGRYWTMWKLPM+GCTDA+QV  EV E +  YP + VRIIGFDNKRQVQCISFIA KP
Sbjct:   87 NYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.285e-35
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YL+R GW+PCLEFEL KG+VY EH+KSP YYDGRYWTMWKLPM+G TD  QV+KEV EV   YP +FVR+IGF+N RQVQCISFIA  P
Sbjct:   45 YLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.112e-34
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 287
            YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ +SFIA+KPPG
Sbjct:   79 YLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.665e-33
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 287
            YL+R+GWIPCLEF  + G+VYRE+  SP YYDGRYWTMWKLPM+GC DATQV KE+ E  K YP +F R+IGFDN +Q QC+SFIA KPPG
Sbjct:   79 YLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.665e-33
Identity = 64/92 (69.57%), Postives = 76/92 (82.61%), Query Frame = 3
Query:   12 HYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 287
            +YL+  GWIP LEFE++ G+VYREH KSPGYYDGRYWTMWKLPM+G TD  QV+ EV EV+K  P +FVR IGF++KR+VQCISFIA KP G
Sbjct:   31 NYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.256e-32
Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 3
Query:   54 ELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 284
            ELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.947e-32
Identity = 59/89 (66.29%), Postives = 75/89 (84.27%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YL+R+ W+PCLEF+LE G + R++++SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN RQVQCISFI  KP
Sbjct:   83 YLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.910e-31
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 281
            YL+++ W+PCLEFE E G + R +  SPGYYDGRYW MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN RQVQCISFI  KP
Sbjct:   99 YLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.728e-27
Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 287
            YL+R+ W+PCLEF  E G+VYRE+  SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E    YP     I+GFDN RQ Q ++FIA KP G
Sbjct:   78 YLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166          
BLAST of EY702149 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.416e-26
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 3
Query:   15 YLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFIAAKP 281
            Y+I+SGW PC+EF+++ G V RE    PGYYDGRYWTMWKLPM+GCTD+  VL+E+ E +K Y    ++R +GFDN RQVQC SFI  +P
Sbjct:   90 YVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          
The following BLAST results are available for this feature:
BLAST of EY702149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
RBS_SILPR8.285e-3572.22Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA8.285e-3573.03Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_AEGTA4.112e-3470.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE2.665e-3369.23Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL2.665e-3369.57Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SINAL2.256e-3277.92Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS_PINTH2.947e-3266.29Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA1.910e-3166.29Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY3.728e-2762.64Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MARPA1.416e-2658.89Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-F04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702149 ID=EY702149; Name=EY702149; organism=Citrus sinensis; type=EST; length=607bp
CTCAAGGAAATCATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAA
TTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGG
ATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGT
GCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAA
TACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAAGT
GCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCA
ATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGT
AACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAATT
TGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTCCCC
GACTTTGGCTTCTTTTTTTTTTTTTTATATATATTTTAATAATTGAATCC
TTTGTTTTCAGTTTCATTAATCTGGGTCTCGGATGTTCAGTTTAATGAGT
GAGAATTACTGGAATTAAAAGAGTAGTTTTATGATTCTTGCCAAAAAAAA
AAAAAAA
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