EY702143

Overview
NameEY702143
Unique NameEY702143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:   11 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +VI++G +E  R A        DP+   YPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGPI  +A     P++ N
Sbjct:  169 IWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +VI++G IE  R A        DP+   YPGG FDPLGLA DP    ++++ EIK+ RLAM +   F +QA  TGKGPI  +A     P++ N
Sbjct:  173 IWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +VI++G +E  R A     + V  LYPGG FDPLGLA DP     L++ E+K+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:  163 IWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 256          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +V+++G++E  R       + + ++YPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGPI  ++     P++ N
Sbjct:  132 IWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:  162 IWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:  162 IWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of EY702143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CB2D_SOLLC4.415e-1143.62Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC4.415e-1143.62Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC4.415e-1143.62Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2B_PINSY4.415e-1144.33Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_SOLLC4.415e-1143.62Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PYRPY4.415e-1144.33Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB28_PEA4.415e-1143.62Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB25_SOLLC4.415e-1140.43Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB25_PETSP4.415e-1143.62Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB24_TOBAC4.415e-1143.62Chlorophyll a-b binding protein 40, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-E09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702143 ID=EY702143; Name=EY702143; organism=Citrus sinensis; type=EST; length=661bp
CCACGCGTCCGACCACTTCTCTTTCTCATTAACAACATTGATTTGGATTG
AAGTTATTGTGATTGGGTACATAGAATATCAAAGAAATGCAGAGCTTGAT
CCAGTGAAAAGACTATACCCTGGTGGGTATTTTGATCCTCTTGGCTTGGC
CTCAGATCCTGGGAAGCTTGAAAATCTTCAATTGGCTGAAATCAAGCACG
CTCGTCTAGCAATGGTAGCATTTTTAATCTTTGGAATCCAGGCTGCTTTT
ACTGGCAAAGGGCCCATCAGCTTTGTGGCTACATTTAACCAGTGACCCAT
TTCATAAAATTTCATGCCTTGGGTTCTCTTAATTAAGTAATTGTAAAATT
CAATATCAATACTTCACTATGGATGCTGCTACTTTTATATAATTATTGTA
TGTTATGTACTTGTTCAGCCAAATTTCATATGTAAATCACTTTCTTTTGA
GGGGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAANAA
AANNNAAAAAAAAAAAAAAAAGGGGGGGGCCCCCTCAAAAGGACCCAATT
TTACTTCCCGGGGGTTGCAAGGAAAAACCCCTTTTTAGGGGCCCCCAAAA
TTAATTTCCGG
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