EY702100

Overview
NameEY702100
Unique NameEY702100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702100_ssr121 microsatellite EY702100_ssr121:121..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.107e-26
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E  K YP SF+RIIGFDN RQV    F
Sbjct:  106 LETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISF 175

HSP 2 Score: 24.2534 bits (51), Expect = 5.107e-26
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  169 QVQCISFIAYKPAG 182
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.107e-26
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E  K YP SF+RIIGFDN RQV    F
Sbjct:  106 LEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISF 175

HSP 2 Score: 24.2534 bits (51), Expect = 5.107e-26
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  169 QVQCISFIAYKPAG 182
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.651e-26
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E  KEYP++ +RIIGFDN RQV    F
Sbjct:  101 LEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISF 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.651e-26
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3 
Query:  564 KLQCISFLAAKPP 602
            ++QCISF+A KPP
Sbjct:  164 QVQCISFIAYKPP 176
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.651e-26
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E   EYP++F+RIIGFDN RQV    F
Sbjct:  101 LEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISF 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.651e-26
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3 
Query:  564 KLQCISFLAAKPP 602
            ++QCISF+A KPP
Sbjct:  164 QVQCISFIAYKPP 176
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.651e-26
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E   EYP++F+RIIGFDN RQV    F
Sbjct:  101 LEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISF 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.651e-26
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3 
Query:  564 KLQCISFLAAKPP 602
            ++QCISF+A KPP
Sbjct:  164 QVQCISFIAYKPP 176
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 6.659e-26
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 2 
Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E  K YP +FVRIIGFDN RQV +  F
Sbjct:   95 GFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISF 161

HSP 2 Score: 23.483 bits (49), Expect = 6.659e-26
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++Q ISF+A KPPG
Sbjct:  155 QVQLISFIAYKPPG 168
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.659e-26
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 2 
Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E  K YP +FVRIIGFDN RQV +  F
Sbjct:   95 GFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISF 161

HSP 2 Score: 23.483 bits (49), Expect = 6.659e-26
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++Q ISF+A KPPG
Sbjct:  155 QVQLISFIAYKPPG 168
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 6.659e-26
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 2 
Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E  K YP +FVRIIGFDN RQV +  F
Sbjct:   95 GFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISF 161

HSP 2 Score: 23.483 bits (49), Expect = 6.659e-26
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++Q ISF+A KPPG
Sbjct:  155 QVQLISFIAYKPPG 168
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 8.657e-26
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E  KEYP +F+RIIGFDN RQV    F
Sbjct:  101 LEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISF 170

HSP 2 Score: 25.0238 bits (53), Expect = 8.657e-26
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3 
Query:  564 KLQCISFLAAKPP 602
            ++QCISF+A KPP
Sbjct:  164 QVQCISFIAYKPP 176
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 8.657e-26
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E  KEYP +F+RIIGFDN RQV    F
Sbjct:  101 LEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISF 170

HSP 2 Score: 25.0238 bits (53), Expect = 8.657e-26
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3 
Query:  564 KLQCISFLAAKPP 602
            ++QCISF+A KPP
Sbjct:  164 QVQCISFIAYKPP 176
The following BLAST results are available for this feature:
BLAST of EY702100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
RBS_PYRPY5.107e-2671.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP5.107e-2671.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_RAPSA6.651e-2670.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_BRANA6.651e-2670.00Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS1_BRANA6.651e-2670.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ6.659e-2676.12Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS1_ORYSJ6.659e-2676.12Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI6.659e-2676.12Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_ARATH8.657e-2670.00Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS2B_ARATH8.657e-2670.00Ribulose bisphosphate carboxylase small chain 2B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-A12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702100 ID=EY702100; Name=EY702100; organism=Citrus sinensis; type=EST; length=890bp
GGGGGGGGGGGGGGGGGGGGNTTTTTTTTATNTAATGGTNNNNNNNNNNN
NNNNNNNNNNNNNNNTTCGTCGACCCACGCGTCCGGGATTCCCTGCTCGG
AATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC
TCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCTTTAGGA
GAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCATTCAATA
TCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTTGGGTTA
AGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTTTTTTTT
GTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCATAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCAC
CAGGCGTCTAGGCTCCCCATTAAATCTGCGTAACCACCCATGCCATATTG
TTGATTATAATTAAGCGGAACCCCCATAATGATCATTCGATCAATGGGGG
TTCCGTTTAGCGTCAATTTGCACTTAAGGCTGCTGTCGTGGCTGGTCAAA
TTTTTTTGGTTTTCTCCCCGAACTGGGCCTTTTTTTCTTTTAAAAACATT
TTAATAAATGGAATCGCTAAAAAAGAAGACAAAAAAGAAACTATTTCAAA
TGAACATTTCCTTCCTTTATCTTTTACATCTAATCCAGCT
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