EY702100 | Citrus Genome Database

Overview


Name	EY702100
Unique Name	EY702100
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	890

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY702100_ssr121	microsatellite	EY702100_ssr121:121..144.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.170e-23
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 2

Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E  K YP +F+RIIGFDN RQV    F
Sbjct:  107 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISF 173

HSP 2 Score: 22.3274 bits (46), Expect = 8.170e-23
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QCISF+A KP
Sbjct:  167 QVQCISFIAYKP 178

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 8.170e-23
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 2

Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E  K YP +F+RIIGFDN RQV    F
Sbjct:  106 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISF 172

HSP 2 Score: 22.3274 bits (46), Expect = 8.170e-23
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QCISF+A KP
Sbjct:  166 QVQCISFIAYKP 177

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.062e-22
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 2

Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E  K YP +F+RIIGFDN RQV    F
Sbjct:  110 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSF 176

HSP 2 Score: 21.9422 bits (45), Expect = 1.062e-22
Identity = 7/12 (58.33%), Postives = 11/12 (91.67%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QC+SF+A KP
Sbjct:  170 QVQCVSFIAYKP 181

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.063e-22
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 2

Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E  K YP +F+RIIGFDN RQV    F
Sbjct:  106 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSF 172

HSP 2 Score: 21.9422 bits (45), Expect = 1.063e-22
Identity = 7/12 (58.33%), Postives = 11/12 (91.67%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QC+SF+A KP
Sbjct:  166 QVQCVSFIAYKP 177

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.063e-22
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 2

Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E  K YP +F+RIIGFDN RQV    F
Sbjct:  107 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSF 173

HSP 2 Score: 21.9422 bits (45), Expect = 1.063e-22
Identity = 7/12 (58.33%), Postives = 11/12 (91.67%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QC+SF+A KP
Sbjct:  167 QVQCVSFIAYKP 178

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.384e-22
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 2

Query:  362 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            WV  L+   +G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E  KEYP +F+R+IGFDN RQV    F
Sbjct:   97 WVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSF 173

HSP 2 Score: 20.7866 bits (42), Expect = 1.384e-22
Identity = 6/12 (50.00%), Postives = 10/12 (83.33%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QC+SF+  KP
Sbjct:  167 QVQCVSFIVEKP 178

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.384e-22
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 2

Query:  362 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            WV  L+   +G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E  KEYP +F+R+IGFDN RQV    F
Sbjct:   97 WVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSF 173

HSP 2 Score: 20.7866 bits (42), Expect = 1.384e-22
Identity = 6/12 (50.00%), Postives = 10/12 (83.33%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QC+SF+  KP
Sbjct:  167 QVQCVSFIVEKP 178

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.386e-22
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 2

Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQV 568
            G+++REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV KEYP  + RIIGFDN RQV
Sbjct:   95 GFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQV 156

HSP 2 Score: 24.2534 bits (51), Expect = 1.386e-22
Identity = 8/14 (57.14%), Postives = 13/14 (92.86%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++Q +SF+A+KPPG
Sbjct:  155 QVQSVSFIASKPPG 168

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.425e-22
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 2

Query:  362 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            WV  L+   +G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E  KEYP +F+R+IGFDN RQV    F
Sbjct:   97 WVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSF 173

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.800e-22
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 2

Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L++G+V+R++ S P YYDGRYWTMWKLPM+GCTD+ QVL+E+    KEYP++F+RIIGFDN RQV    F
Sbjct:  105 LEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISF 174

HSP 2 Score: 24.2534 bits (51), Expect = 1.800e-22
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  168 QVQCISFIAYKPKG 181

The following BLAST results are available for this feature:

BLAST of EY702100 vs. ExPASy Swiss-Prot

BLAST of EY702100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
RBS3_MESCR	8.170e-23	67.16	Ribulose bisphosphate carboxylase small chain 3, c...	[more]
RBS1_MESCR	8.170e-23	67.16	Ribulose bisphosphate carboxylase small chain 1, c...	[more]
RBS6_MESCR	1.062e-22	67.16	Ribulose bisphosphate carboxylase small chain 6, c...	[more]
RBS5_MESCR	1.063e-22	67.16	Ribulose bisphosphate carboxylase small chain 5, c...	[more]
RBS4_MESCR	1.063e-22	67.16	Ribulose bisphosphate carboxylase small chain 4, c...	[more]
RBS3_FRIAG	1.384e-22	62.34	Ribulose bisphosphate carboxylase small chain 3, c...	[more]
RBS2_FRIAG	1.384e-22	62.34	Ribulose bisphosphate carboxylase small chain 2, c...	[more]
RBS_AEGTA	1.386e-22	70.97	Ribulose bisphosphate carboxylase small chain, chl...	[more]
RBS1_FRIAG	1.425e-22	62.34	Ribulose bisphosphate carboxylase small chain 1/4,...	[more]
RBS_GOSHI	1.800e-22	62.86	Ribulose bisphosphate carboxylase small chain, chl...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-001-A12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702100 ID=EY702100; Name=EY702100; organism=Citrus sinensis; type=EST; length=890bp
GGGGGGGGGGGGGGGGGGGGNTTTTTTTTATNTAATGGTNNNNNNNNNNN
NNNNNNNNNNNNNNNTTCGTCGACCCACGCGTCCGGGATTCCCTGCTCGG
AATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC
TCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCTTTAGGA
GAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCATTCAATA
TCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTTGGGTTA
AGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTTTTTTTT
GTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCATAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCAC
CAGGCGTCTAGGCTCCCCATTAAATCTGCGTAACCACCCATGCCATATTG
TTGATTATAATTAAGCGGAACCCCCATAATGATCATTCGATCAATGGGGG
TTCCGTTTAGCGTCAATTTGCACTTAAGGCTGCTGTCGTGGCTGGTCAAA
TTTTTTTGGTTTTCTCCCCGAACTGGGCCTTTTTTTCTTTTAAAAACATT
TTAATAAATGGAATCGCTAAAAAAGAAGACAAAAAAGAAACTATTTCAAA
TGAACATTTCCTTCCTTTATCTTTTACATCTAATCCAGCT