EY736063

Overview
NameEY736063
Unique NameEY736063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.435e-17
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:   10 GKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   10 GKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: RS27A_NEUCR (40S ribosomal protein S27a OS=Neurospora crassa GN=ubi-3 PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 3
Query:  342 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 503
            LAVL++YKVD  GK++RLR+ECPN  CGAG FMA   DR YCG+C LTYV++K+
Sbjct:   24 LAVLKYYKVDSDGKIERLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYVFEKS 77          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.480e-14
Identity = 34/67 (50.75%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:   10 GKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.933e-14
Identity = 33/68 (48.53%), Postives = 51/68 (75.00%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 275
            GK+I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG+
Sbjct:   10 GKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77          
The following BLAST results are available for this feature:
BLAST of EY736063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
NEDD8_CAEEL5.435e-1758.21NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB3_ORYSJ2.697e-1655.22NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
NEDD8_RAT7.848e-1653.73NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT7.848e-1653.73NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE7.848e-1653.73NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN7.848e-1653.73NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN7.848e-1653.73NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RS27A_NEUCR1.025e-1564.8140S ribosomal protein S27a OS=Neurospora crassa GN... [more]
NEDD8_DICDI1.480e-1450.75NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
UBL1_SCHPO1.933e-1448.53Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-009-E08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736063 ID=EY736063; Name=EY736063; organism=Citrus sinensis; type=EST; length=665bp
CCACGCGTCCGCTGAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCA
GATCTTCGTGAAAACCCTAACGGGAAAGACATAACCCTAGAGGTCGAATC
ATCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGA
TTCCACCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGAC
GGCAGAACCCTAGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCT
CGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACA
CCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTC
TTGCAGTTTTACAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAA
GGAGTGTCCGAATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACT
TTGACAGGCACTACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAG
GCTGGCGGTGATTGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAATTA
GTATTAATTACTATGGTTTTTGTGGTTCANAAATTATGACTCTTTCGTAA
TTTTGTNTGACTATATACTTGTNTGCTTGAGCGTTTTAATTAAATGGTTA
TCTGTTTTTAATTCT
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