EY736063 | Citrus Genome Database

Overview


Name	EY736063
Unique Name	EY736063
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	665

Libraries


Library Name	Type
Sweet orange fruit, development stadium (6 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY736063_ssr324	microsatellite	EY736063_ssr324:324..335.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10133	contig	Csv1_Contig10133:1..666.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.129e-31
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 3

Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 27.335 bits (59), Expect = 6.129e-31
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.982e-31
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 3

Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK I LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 27.335 bits (59), Expect = 7.982e-31
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.982e-31
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 3

Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 27.335 bits (59), Expect = 7.982e-31
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.040e-30
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 3

Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 27.335 bits (59), Expect = 1.040e-30
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.040e-30
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 3

Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 27.335 bits (59), Expect = 1.040e-30
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.354e-30
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 3

Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 27.335 bits (59), Expect = 1.354e-30
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.354e-30
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 3

Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 27.335 bits (59), Expect = 1.354e-30
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.763e-30
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 3

Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 27.335 bits (59), Expect = 1.763e-30
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.763e-30
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 3

Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 27.335 bits (59), Expect = 1.763e-30
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.763e-30
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 3

Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 27.335 bits (59), Expect = 1.763e-30
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

The following BLAST results are available for this feature:

BLAST of EY736063 vs. ExPASy Swiss-Prot

BLAST of EY736063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122


Match Name	E-value	Identity	Description
UBIQ_ACECL	6.129e-31	94.03	Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1	[more]
UBIQ_TRYCR	7.982e-31	95.52	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_ACACA	7.982e-31	95.52	Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1	[more]
UBIQ_GEOCY	1.040e-30	94.03	Ubiquitin OS=Geodia cydonium PE=3 SV=1	[more]
UBIQ_CAEEL	1.040e-30	94.03	Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ...	[more]
UBIQ_EUPEU	1.354e-30	94.03	Ubiquitin OS=Euplotes eurystomus PE=3 SV=1	[more]
UBIQ_AGLNE	1.354e-30	94.03	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_XENLA	1.763e-30	94.03	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_SPOFR	1.763e-30	94.03	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_RAT	1.763e-30	94.03	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-705-009-E08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY736063 ID=EY736063; Name=EY736063; organism=Citrus sinensis; type=EST; length=665bp
CCACGCGTCCGCTGAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCA
GATCTTCGTGAAAACCCTAACGGGAAAGACATAACCCTAGAGGTCGAATC
ATCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGA
TTCCACCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGAC
GGCAGAACCCTAGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCT
CGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACA
CCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTC
TTGCAGTTTTACAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAA
GGAGTGTCCGAATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACT
TTGACAGGCACTACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAG
GCTGGCGGTGATTGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAATTA
GTATTAATTACTATGGTTTTTGTGGTTCANAAATTATGACTCTTTCGTAA
TTTTGTNTGACTATATACTTGTNTGCTTGAGCGTTTTAATTAAATGGTTA
TCTGTTTTTAATTCT