EY736063

Overview
NameEY736063
Unique NameEY736063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  342 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 500
            LAVL++YKVD++GK+ RLR+ECP  ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: RS27A_RAT (40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  342 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 500
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  342 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 500
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 42/67 (62.69%), Postives = 54/67 (80.60%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   10 GKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.420e-18
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   10 GKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.420e-18
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   10 GKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.420e-18
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   10 GKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 38/67 (56.72%), Postives = 53/67 (79.10%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:   10 GKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: RS27A_DROME (40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 3
Query:  342 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 500
            LAVL++YKVD++GK+ RLR+ECP   CGAG FMA H DRHYCGKC LT+V+ K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.435e-17
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK+I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   10 GKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of EY736063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RS27A_ICTPU2.882e-1871.7040S ribosomal protein S27a OS=Ictalurus punctatus ... [more]
RS27A_RAT3.764e-1869.8140S ribosomal protein S27a OS=Rattus norvegicus GN... [more]
RS27A_MOUSE3.764e-1869.8140S ribosomal protein S27a OS=Mus musculus GN=Rps2... [more]
RUB1_DESAN4.916e-1862.69NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ6.420e-1861.19NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ6.420e-1861.19NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH6.420e-1861.19NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME1.868e-1756.72NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RS27A_DROME4.162e-1767.9240S ribosomal protein S27a OS=Drosophila melanogas... [more]
RUB2_ARATH5.435e-1759.70NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-009-E08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736063 ID=EY736063; Name=EY736063; organism=Citrus sinensis; type=EST; length=665bp
CCACGCGTCCGCTGAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCA
GATCTTCGTGAAAACCCTAACGGGAAAGACATAACCCTAGAGGTCGAATC
ATCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGA
TTCCACCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGAC
GGCAGAACCCTAGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCT
CGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACA
CCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTC
TTGCAGTTTTACAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAA
GGAGTGTCCGAATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACT
TTGACAGGCACTACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAG
GCTGGCGGTGATTGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAATTA
GTATTAATTACTATGGTTTTTGTGGTTCANAAATTATGACTCTTTCGTAA
TTTTGTNTGACTATATACTTGTNTGCTTGAGCGTTTTAATTAAATGGTTA
TCTGTTTTTAATTCT
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