DR908561

Overview
NameDR908561
Unique NameDR908561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908561 vs. ExPASy Swiss-Prot
Match: PYRF_SORMA (Orotidine 5'-phosphate decarboxylase OS=Sordaria macrospora GN=URA3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.158e-15
Identity = 52/134 (38.81%), Postives = 69/134 (51.49%), Query Frame = 2
Query:   80 AEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASW-------PGAPVNPA----------FIQATPGVQM------VKGGDDLGQQYNTPYSVIYDRGSDIIIVGRGIIKAADPALAAREYRLQGWEAY 412
            A+MSS G L  G YT   VK A  + DFV+G+++    +        PG                FI  TPG ++         GD LGQQYNTP +++  +G+DI IVGRGII A+DP   A  YR + W+AY
Sbjct:  255 AQMSSKGCLMDGKYTWECVKAARKNKDFVMGYVAQQNLNGITKEDLAPGYEDGETSTEEEAQADNFIHMTPGCKLPPPGEEAPQGDGLGQQYNTPDNLVNIKGTDIAIVGRGIITASDPPAEAERYRRKAWKAY 388          
BLAST of DR908561 vs. ExPASy Swiss-Prot
Match: PYRF_NEUCR (Orotidine 5'-phosphate decarboxylase OS=Neurospora crassa GN=pyr-4 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 52/134 (38.81%), Postives = 69/134 (51.49%), Query Frame = 2
Query:   80 AEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFIS-----------VNPASWPGAPVNPA------FIQATPGVQM------VKGGDDLGQQYNTPYSVIYDRGSDIIIVGRGIIKAADPALAAREYRLQGWEAY 412
            A+MSS G L  G YT   VK A  +  FV+G+++           + P+   G            FI  TPG ++         GD LGQQYNTP +++  +G+DI IVGRGII AADP   A  YR + W+AY
Sbjct:  256 AQMSSKGCLMDGKYTWECVKAARKNKGFVMGYVAQQNLNGITKEALAPSYEDGESTTEEEAQADNFIHMTPGCKLPPPGEEAPQGDGLGQQYNTPDNLVNIKGTDIAIVGRGIITAADPPAEAERYRRKAWKAY 389          
BLAST of DR908561 vs. ExPASy Swiss-Prot
Match: PYRF_CANRU (Orotidine 5'-phosphate decarboxylase OS=Candida rugosa GN=URA3 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = 2
Query:   80 AEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDIIIVGRGII-KAADPALAAREYRLQGWEAYLAKCS 427
            AE+SS G +A G YT   V+IA+   +FV GFI+       G      ++  TPGV +   GD LGQQY T  +V+   G+D+IIVGRG+  K   PA+    YR  GW+AY  + S
Sbjct:  151 AELSSKGAIAHGKYTEETVEIAKTDKEFVFGFIAQGDMG--GREEGFDWVVMTPGVGLDDTGDALGQQYRTVDTVV-QTGTDVIIVGRGLFGKGRHPAVEGERYRKAGWDAYTKRVS 264          
BLAST of DR908561 vs. ExPASy Swiss-Prot
Match: PYRF_YARLI (Orotidine 5'-phosphate decarboxylase OS=Yarrowia lipolytica GN=URA3 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 46/112 (41.07%), Postives = 66/112 (58.93%), Query Frame = 2
Query:   80 AEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDIIIVGRGII-KAADPALAAREYRLQGWEAY 412
            AE+S  G+LA G+Y+   +++A    +FV+GFI+ N         +  ++  TPGV +   GD LGQQY T   V+   G+DIIIVGRG+  +  DP   A+ Y+  GWEAY
Sbjct:  175 AELSCKGSLATGEYSKQTIELARSDPEFVVGFIAQNRPKGD----SEDWLILTPGVGLDDKGDALGQQYRTVEDVM-STGTDIIIVGRGLYGQNRDPIEEAKRYQKAGWEAY 281          
BLAST of DR908561 vs. ExPASy Swiss-Prot
Match: PYR5_NAEGR (Uridine 5'-monophosphate synthase OS=Naegleria gruberi GN=UMP PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 2
Query:   80 AEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDIIIVGRGIIKAADPALAAREYRLQGWEAY 412
            A+MS+ G          A+K+A ++ DFV GFI  +            F+  TPGV++   GD LGQQYN+P  V+ ++  D+IIVGRGI    +   AA+ YR  GWEAY
Sbjct:  382 AQMSTEGATTGESTKQEALKVALENPDFVSGFICQSKLR----DDLDQFLYCTPGVRLDVKGDSLGQQYNSPEYVVCEKKCDVIIVGRGIYHDKERQNAAKLYRKLGWEAY 488          
The following BLAST results are available for this feature:
BLAST of DR908561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PYRF_SORMA1.158e-1538.81Orotidine 5'-phosphate decarboxylase OS=Sordaria m... [more]
PYRF_NEUCR1.512e-1538.81Orotidine 5'-phosphate decarboxylase OS=Neurospora... [more]
PYRF_CANRU1.975e-1541.88Orotidine 5'-phosphate decarboxylase OS=Candida ru... [more]
PYRF_YARLI2.851e-1441.07Orotidine 5'-phosphate decarboxylase OS=Yarrowia l... [more]
PYR5_NAEGR1.084e-1340.54Uridine 5'-monophosphate synthase OS=Naegleria gru... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16689 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908561 ID=DR908561; Name=DR908561; organism=Citrus sinensis; type=EST; length=616bp
TCACATAATCTCTGGACCGGGAATTGTGGATGGTCTGAAATTAAAGGGAT
TGCCTCGTGGTAGGGGTCTGTTGCTGCTGGCTGAGATGAGCTCAGCTGGT
AACCTAGCAAAGGGAGACTATACAGCAGCAGCTGTGAAAATTGCCGAGGA
TCATTCTGATTTTGTCATTGGATTCATCTCAGTTAATCCAGCATCATGGC
CAGGGGCACCAGTCAATCCAGCCTTTATTCAAGCAACCCCTGGAGTTCAA
ATGGTAAAGGGAGGTGATGATCTAGGCCAACAATATAACACTCCATACTC
GGTCATCTATGATAGGGGTAGTGACATAATTATTGTGGGTCGTGGAATTA
TAAAGGCAGCAGACCCTGCATTGGCAGCCCGTGAGTACCGGCTTCAAGGA
TGGGAGGCCTACTTGGCTAAGTGCAGCTGATCCTCCATTTAGGTCTGGAC
TTCTGCTCGCTTCAACGGTTGCGATAATGAACAGATGAGTCAAGTTCTGT
TTAATATACCATGCATTGGTATGTCTTATGAAACCGAGAGAGTTTGAAGC
TTTTGGCTGCATTGTACTTATAGTAACTTCTCAAGTCTGGTAATGCTGCT
TGTCTGGTTTTCCCAA
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