DR908557

Overview
NameDR908557
Unique NameDR908557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_MOUSE (40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 4.516e-44
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 3
Query:  129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 497
            R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   35 RYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          

HSP 2 Score: 22.7126 bits (47), Expect = 4.516e-44
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:   38 QTEKAFLKQPKVF 76
            QTE+A+ KQP +F
Sbjct:    5 QTERAYQKQPTIF 17          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_MACFA (40S ribosomal protein S11 OS=Macaca fascicularis GN=RPS11 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 4.516e-44
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 3
Query:  129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 497
            R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   35 RYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          

HSP 2 Score: 22.7126 bits (47), Expect = 4.516e-44
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:   38 QTEKAFLKQPKVF 76
            QTE+A+ KQP +F
Sbjct:    5 QTERAYQKQPTIF 17          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_HUMAN (40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 4.516e-44
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 3
Query:  129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 497
            R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   35 RYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          

HSP 2 Score: 22.7126 bits (47), Expect = 4.516e-44
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:   38 QTEKAFLKQPKVF 76
            QTE+A+ KQP +F
Sbjct:    5 QTERAYQKQPTIF 17          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_BOVIN (40S ribosomal protein S11 OS=Bos taurus GN=RPS11 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 4.516e-44
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 3
Query:  129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 497
            R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   35 RYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          

HSP 2 Score: 22.7126 bits (47), Expect = 4.516e-44
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:   38 QTEKAFLKQPKVF 76
            QTE+A+ KQP +F
Sbjct:    5 QTERAYQKQPTIF 17          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_YEAST (40S ribosomal protein S11 OS=Saccharomyces cerevisiae GN=RPS11A PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.000e-43
Identity = 81/123 (65.85%), Postives = 101/123 (82.11%), Query Frame = 3
Query:  129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 497
            R++K+ GLGFKTP+ AIEG+YIDKKCPFTG VSIRG+IL GT  S KM+RTI++RR YLH++ KY RYEKRH N+P H+SP FRV+ GD V +GQCRP+SKTVRFNV+KV  + ++G A K F
Sbjct:   33 RWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV--SAAAGKANKQF 153          

HSP 2 Score: 22.3274 bits (46), Expect = 1.000e-43
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:   38 QTEKAFLKQPKVF 76
            Q+E+AF KQP +F
Sbjct:    8 QSERAFQKQPHIF 20          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_SCHPO (40S ribosomal protein S11 OS=Schizosaccharomyces pombe GN=rps11a PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 2.214e-43
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 3
Query:  129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 461
            R++K +GLGFKTP EAI G Y+DKKCPF G VSIRGRIL GT  S KM+RTII+RR YLHF+ KY RYEKRH N+ AH+SP FR+ EGD V +GQCRPLSKTVRFNVL+V+
Sbjct:   30 RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEGDVVTVGQCRPLSKTVRFNVLRVV 140          

HSP 2 Score: 22.3274 bits (46), Expect = 2.214e-43
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:   38 QTEKAFLKQPKVF 76
            Q+E+AF KQP +F
Sbjct:    8 QSERAFQKQPHIF 20          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_ANOGA (40S ribosomal protein S11 OS=Anopheles gambiae GN=RpS11 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.221e-42
Identity = 82/125 (65.60%), Postives = 98/125 (78.40%), Query Frame = 3
Query:  129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFT 500
            R   SIGLGFKTP+EAI GTYIDKKCPFTG +SIRGRIL G     KM+RTI++RR+YLHF++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV       G+KK F+
Sbjct:   30 RMHHSIGLGFKTPKEAITGTYIDKKCPFTGHISIRGRILTGVVRKMKMHRTIVIRRDYLHFIRKYDRFEKRHRNMSVHLSPCFRDVEAGDIVTVGECRPLSKTVRFNVLKV---SKMAGSKKKFS 151          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_DROYA (40S ribosomal protein S11 OS=Drosophila yakuba GN=RpS11 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.096e-41
Identity = 82/121 (67.77%), Postives = 95/121 (78.51%), Query Frame = 3
Query:  138 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 497
            + +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G    AKM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:   35 RDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV---SKGQGAKKSF 152          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_DROPS (40S ribosomal protein S11 OS=Drosophila pseudoobscura pseudoobscura GN=RpS11 PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.096e-41
Identity = 82/124 (66.13%), Postives = 96/124 (77.42%), Query Frame = 3
Query:  129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 497
            R ++ +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G     KM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:   32 RRYRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILIGVVRKTKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPAFRDVEHGDIVTIGECRPLSKTVRFNVLKV---NKGQGAKKSF 152          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_DROME (40S ribosomal protein S11 OS=Drosophila melanogaster GN=RpS11 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.096e-41
Identity = 82/121 (67.77%), Postives = 95/121 (78.51%), Query Frame = 3
Query:  138 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 497
            + +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G    AKM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:   35 RDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV---SKGQGAKKSF 152          
The following BLAST results are available for this feature:
BLAST of DR908557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_MOUSE4.516e-4467.7440S ribosomal protein S11 OS=Mus musculus GN=Rps11... [more]
RS11_MACFA4.516e-4467.7440S ribosomal protein S11 OS=Macaca fascicularis G... [more]
RS11_HUMAN4.516e-4467.7440S ribosomal protein S11 OS=Homo sapiens GN=RPS11... [more]
RS11_BOVIN4.516e-4467.7440S ribosomal protein S11 OS=Bos taurus GN=RPS11 P... [more]
RS11_YEAST1.000e-4365.8540S ribosomal protein S11 OS=Saccharomyces cerevis... [more]
RS11_SCHPO2.214e-4371.1740S ribosomal protein S11 OS=Schizosaccharomyces p... [more]
RS11_ANOGA4.221e-4265.6040S ribosomal protein S11 OS=Anopheles gambiae GN=... [more]
RS11_DROYA6.096e-4167.7740S ribosomal protein S11 OS=Drosophila yakuba GN=... [more]
RS11_DROPS6.096e-4166.1340S ribosomal protein S11 OS=Drosophila pseudoobsc... [more]
RS11_DROME6.096e-4167.7740S ribosomal protein S11 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16685 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-24_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908557 ID=DR908557; Name=DR908557; organism=Citrus sinensis; type=EST; length=617bp
CTCAACAACTCAGCCCCGAAATCCAGCCATGGCGGAGCAGACCGAGAAGG
CGTTTTTGAAGCAGCCCAAGGTGTTTCTCAGCCTCGAAGAAGGCAGGAAA
AGGAAAGAGGCCAGGAAAGGGAGGGAATCGATTCTGGAAGAGCATAGGCT
TGGGATTCAAGACTCCCAGAGAGGCAATTGAAGGGACTTACATCGATAAG
AAGTGTCCGTTCACCGGCACTGTTTCCATCAGGGGTCGTATCCTTGCTGG
TACTTGCCACAGTGCTAAGATGAACAGAACCATCATCGTTAGGCGTAACT
ACCTTCACTTTGTGAAGAAATATCAGAGGTATGAGAAGAGGCACTCTAAC
ATTCCAGCACACATCTCACCTTGTTTCCGTGTGAAAGAGGGAGACCATGT
TATCATTGGCCAGTGCAGGCCTTTGTCAAAGACGGTCAGGTTTAATGTCT
TGAAAGTGATACCTGCTGGGTCTTCTGGTGGTGCAAAGAAGGCATTCACG
GGCGATGTGAGTTGGAGTCCGCTGTTTCCAACATTAAATTTTTGCTACTT
TTGTTCCATGGGACTTTGTTATTTGGATTTTTGCATTGGGAATTAAATCC
TTTTATGTCCTAATATA
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