DR908557
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS17_METKA (30S ribosomal protein S17P OS=Methanopyrus kandleri GN=rps17p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 5.732e-23 Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 3 Query: 129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 461 R K IGLG K PR + D CPF G + +RG IL G S +M++T+IV R Y + +KY+R+E+R S IPAH PC +EGD V I +CRPLSKT F V++V+ Sbjct: 6 RMAKDIGLGVKPPRRECD----DPNCPFHGNLRVRGMILEGVVVSDRMDKTVIVEREYYRYDRKYERWERRRSRIPAHNPPCIDAQEGDKVRIAECRPLSKTKSFVVIEVL 112
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS17_UNCMA (30S ribosomal protein S17P OS=Uncultured methanogenic archaeon RC-I GN=rps17p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22 Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 138 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 458 K IGL K P+ D +CPF G++++RG+I GT SAKM+++++V R YL KY RYEKR S + AH PC KEGD V+I +CRPLSKT F V++V Sbjct: 3 KDIGLNVKAPKTECN----DPQCPFHGSLAVRGQIFEGTVVSAKMSKSVVVSREYLKRDLKYDRYEKRRSKLHAHNPPCINAKEGDKVVIAECRPLSKTKTFVVVEV 105
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS17_METLZ (30S ribosomal protein S17P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps17p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 8.277e-22 Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 3 Query: 138 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 461 K+IGL P + + D CPF G++ +RG+++ G S +M T++V RN+LH V+KY RYEKR S I AH++PC K GD V I +CRPL+KT + V++VI Sbjct: 3 KNIGLNVAVPEKDCD----DVNCPFHGSLPVRGQVITGKVVSERMQGTVVVERNFLHKVQKYDRYEKRSSKIHAHMAPCLNAKIGDEVKIAECRPLNKTTSYVVVEVI 106
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS17_METMJ (30S ribosomal protein S17P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps17p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.081e-21 Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 138 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 461 ++IGL P E D CPF GT+ +RG+++ G S +MN T++V R +LH+VKKY+RYEKR S AH +PC GD V I +CRPLSKT F V++V+ Sbjct: 3 RNIGLDVPIPETECE----DVNCPFHGTLPVRGQVITGKVVSDRMNGTVVVEREFLHYVKKYKRYEKRRSRYHAHSTPCINAGVGDVVRIAECRPLSKTTNFVVVEVM 106
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS17_METHJ (30S ribosomal protein S17P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps17p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.081e-21 Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 3 Query: 138 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 458 + IGL P + D CPF GT+ +RG+++ G S KM +++V+R+YLHFV+KYQRYEKR S I AH PC + GD V I +CRPLSKT + V++V Sbjct: 3 RDIGLNVPVPEKDCS----DVNCPFHGTLPVRGQVITGKVVSDKMTGSVVVQRDYLHFVRKYQRYEKRSSKIHAHNPPCLHARVGDMVSIAECRPLSKTKTYVVVEV 105
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS17_METBF (30S ribosomal protein S17P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps17p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.081e-21 Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 3 Query: 138 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 455 + IGL P E +Y CPF GT+S+RG+IL GT S+KM+ T+++ R Y+ V KYQRYEKR S + AH PC K GD V I +CR +SKT + V+K Sbjct: 3 RDIGLNIPAPSEECNDSY----CPFHGTLSVRGQILVGTVVSSKMDNTVVIERQYMKLVPKYQRYEKRRSKVHAHNPPCISAKVGDIVTIAECRRISKTKSYVVVK 104
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS17_METMA (30S ribosomal protein S17P OS=Methanosarcina mazei GN=rps17p PE=3 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 1.412e-21 Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 3 Query: 138 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 455 + IGL P E + Y CPF GT+ +RG+IL GT S+KM+ T+++ R Y+ V KYQRYEKR S I AH C K GD V I +CRP+SKT F V+K Sbjct: 3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIVECRPISKTKSFVVVK 104
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS17_METAC (30S ribosomal protein S17P OS=Methanosarcina acetivorans GN=rps17p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.412e-21 Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 3 Query: 138 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 455 + IGL P E + Y CPF GT+ +RG+IL GT S+KM+ T+++ R Y+ V KYQRYEKR S I AH C K GD V I +CRP+SKT + V+K Sbjct: 3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIAECRPISKTKSYVVVK 104
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS17_METPE (30S ribosomal protein S17P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps17p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21 Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 3 Query: 138 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 458 ++IGL + P E + D CPF G +S+RG+++ G S +M TI+V R+YLH+V+KY+RYEKR S + AH PC +VK GD V I +CRP+SK+ F V++V Sbjct: 3 RNIGLNVQPPVEECQ----DVNCPFHGNLSVRGQVITGKVVSDRMLGTIVVGRDYLHYVRKYKRYEKRSSKLHAHNPPCLQVKVGDIVKIAECRPISKSTTFVVVEV 105
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS17_METB6 (30S ribosomal protein S17P OS=Methanoregula boonei (strain 6A8) GN=rps17p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21 Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 3 Query: 138 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 458 ++IGL + P++ + D CPF GT+ +RG+++ G S KM T++V R+YLH+V+KY RYEKR S + AH PC + K GD V I +CRPLSK+ + V++V Sbjct: 3 QNIGLNVQPPKQECK----DVNCPFHGTLPVRGQVITGKVVSDKMMGTVVVARDYLHYVRKYNRYEKRISKLHAHNPPCIQAKVGDLVKIAECRPLSKSTTYVVVEV 105 The following BLAST results are available for this feature:
BLAST of DR908557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DR908557 ID=DR908557; Name=DR908557; organism=Citrus sinensis; type=EST; length=617bpback to top |