DR908554

Overview
NameDR908554
Unique NameDR908554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908554 vs. ExPASy Swiss-Prot
Match: LICH_HUMAN (Lysosomal acid lipase/cholesteryl ester hydrolase OS=Homo sapiens GN=LIPA PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.262e-12
Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = 1
Query:   91 ITTLLGLAEFNPKGKPVADFLKSLCTNPVVN--CYDLLTSLTGRN-CCLNSSTVDLFLRNEPQSTSTKNMVHLAQTVRDGVIAKFNYGRPDYNLMHYGEFRPPIYNISNIPHDLPLFVSYGGNDALADVSDVENLL 489
            I  L G  EF P+   +      +CT+ ++   C +L   L G N   LN S VD++  + P  TS +NM+H +Q V+      F++G    N  HY +  PP YN+ ++   +P  V  GG+D LADV DV  LL
Sbjct:  224 IKDLFGDKEFLPQSAFLKWLGTHVCTHVILKELCGNLCFLLCGFNERNLNMSRVDVYTTHSPAGTSVQNMLHWSQAVKFQKFQAFDWGSSAKNYFHYNQSYPPTYNVKDML--VPTAVWSGGHDWLADVYDVNILL 357          

HSP 2 Score: 23.0978 bits (48), Expect = 2.262e-12
Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  549 HADFIMGINAKDIVYNQVV 605
            H DFI G++A   +YN+++
Sbjct:  374 HLDFIWGLDAPWRLYNKII 392          
BLAST of DR908554 vs. ExPASy Swiss-Prot
Match: LICH_MACFA (Lysosomal acid lipase/cholesteryl ester hydrolase OS=Macaca fascicularis GN=LIPA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.937e-12
Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1
Query:   91 ITTLLGLAEFNPKGKPVADFLKSLCTNPVVN--CYDLLTSLTGRN-CCLNSSTVDLFLRNEPQSTSTKNMVHLAQTVRDGVIAKFNYGRPDYNLMHYGEFRPPIYNISNIPHDLPLFVSYGGNDALADVSDVENLL 489
            I  L G  EF P+   +      +CT+ ++   C +L   L G N   LN S VD++  + P  TS +NM+H +Q V+      F++G    N  HY +  PP YN+ ++   +P  V  GG+D LADV D+  LL
Sbjct:  224 IKDLFGDKEFLPQSAFLKWLGTHVCTHVILKELCGNLCFLLCGFNERNLNMSRVDVYTTHSPAGTSVQNMLHWSQAVKFQKFQAFDWGSSAKNYFHYNQSYPPTYNVKDML--VPTAVWSGGHDWLADVYDINILL 357          

HSP 2 Score: 23.0978 bits (48), Expect = 2.937e-12
Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  549 HADFIMGINAKDIVYNQVV 605
            H DFI G++A   +YN+++
Sbjct:  374 HLDFIWGLDAPWRLYNKII 392          
BLAST of DR908554 vs. ExPASy Swiss-Prot
Match: LIPJ_HUMAN (Lipase member J OS=Homo sapiens GN=LIPJ PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 1.411e-11
Identity = 46/163 (28.22%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   16 LSPIAYLSYMRTALGVIAAKSFVGEITTLLGLAEFNPKGKPVADFLKSLCTNPVVN--CYDLLTSLTGRNCC-LNSSTVDLFLRNEPQSTSTKNMVHLAQTVRDGVIAKFNYGRPDYNLMHYGEFRPPIYNISNIPHDLPLFVSYGGNDALADVSDVENLLDS 495
            L+P+    Y+++ L  +  K +   +    G  +F PK          LC   + +  C ++L  + G +   LN S +D++  + P  TS +NM+H +Q +    +  +++G PD NL+HY +   P+YN++N+  ++   +  G +D LAD  DV N+L S
Sbjct:  167 LAPVFSTKYLKSPLIRMTYK-WKSIVMAFSGNKDFLPKTSFKKFVGSKLCPLQIFDKICLNILFMMFGYDPKNLNMSRLDVYFSHNPAGTSVQNMLHWSQLLNSTHLKAYDWGSPDLNLVHYNQTTSPLYNMTNM--NVATAIWNGKSDLLADPEDV-NILHS 325          

HSP 2 Score: 23.8682 bits (50), Expect = 1.411e-11
Identity = 7/21 (33.33%), Postives = 14/21 (66.67%), Query Frame = 3
Query:  543 YGHADFIMGINAKDIVYNQVV 605
            Y H D + G++  D VY++++
Sbjct:  339 YNHIDSLFGLDVYDQVYHEII 359          
The following BLAST results are available for this feature:
BLAST of DR908554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LICH_HUMAN2.262e-1235.29Lysosomal acid lipase/cholesteryl ester hydrolase ... [more]
LICH_MACFA2.937e-1234.56Lysosomal acid lipase/cholesteryl ester hydrolase ... [more]
LIPJ_HUMAN1.411e-1128.22Lipase member J OS=Homo sapiens GN=LIPJ PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16682 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-03_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908554 ID=DR908554; Name=DR908554; organism=Citrus sinensis; type=EST; length=617bp
AAATCAGCTGCCTTGTTGAGCCCCATTGCTTACTTGAGCTACATGAGAAC
TGCTCTTGGCGTTATTGCTGCCAAATCTTTTGTTGGGGAGATTACTACAC
TGTTAGGTTTGGCTGAGTTCAATCCAAAAGGGAAACCCGTAGCTGACTTT
CTCAAGAGCCTTTGCACTAATCCTGTGGTTAACTGCTACGATTTATTAAC
ATCACTTACTGGGAGAAATTGCTGTCTAAATTCTTCCACAGTCGATCTCT
TCTTGAGAAATGAACCTCAATCAACATCAACCAAAAACATGGTGCACTTG
GCTCAAACTGTTCGAGATGGAGTAATTGCAAAGTTCAACTATGGGAGACC
TGACTACAATCTAATGCATTACGGGGAATTTAGACCACCCATATACAATA
TCTCCAACATTCCCCATGACCTGCCTCTCTTCGTCAGCTATGGAGGCAAC
GATGCACTGGCTGATGTTAGCGATGTCGAGAATTTGCTCGACAGTTTCAA
GTTTCACGACGGGGACAAGCTTGGTGTTCAATTCATCAAAGCTATGGACA
TGCAGATTTCATCATGGGCATCAATGCCAAGGATATTGTGTATAACCAAG
TTGTAGCTTTCTTTAAC
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