DR908552

Overview
NameDR908552
Unique NameDR908552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_PATSP (Calmodulin OS=Patinopecten sp. PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + DG +   EFL M  + M+       ++ AF   + DGD  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18
Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DT+ +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDTDGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADTDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML24_ARATH (Calcium-binding protein CML24 OS=Arabidopsis thaliana GN=CML24 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.251e-18
Identity = 49/135 (36.30%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   84 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNL------LKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQ 470
            + F+ FD + DG I+  EL  +  ++   AS E+   MM+Q D + +G + L+EF+ +    + +G  GN       LK AFE  +LDG+  ++  ELH V++NLG   S+ DC+++I+ +D DGDG V+F++F+
Sbjct:   20 KVFQRFDKNGDGKISVDELKEVIRALSPTASPEETVTMMKQFDLDGNGFIDLDEFVALF--QIGIGGGGNNRNDVSDLKEAFELYDLDGNGRISAKELHSVMKNLGEKCSVQDCKKMISKVDIDGDGCVNFDEFK 152          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_STRIE (Calmodulin OS=Strongylocentrotus intermedius PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 46/149 (30.87%), Postives = 80/149 (53.69%), Query Frame = 3
Query:   21 MAESRPLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            M++   ++ +  T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    1 MSQELTINADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 149          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + DG +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_DICDI (Calmodulin OS=Dictyostelium discoideum GN=calA PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 46/142 (32.39%), Postives = 79/142 (55.63%), Query Frame = 3
Query:   42 SEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            S+E+ T   +    E F  FD D DGSIT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF+  + DG+  ++ AEL  V+ +LG  L+  +  E+I   D DGDG V++++F
Sbjct:    3 SQESLTEEQIAEFKEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGNIDFPEFLTMMARKMQDTDTEEEIREAFKVFDKDGNGYISAAELRHVMTSLGEKLTNEEVDEMIREADLDGDGQVNYDEF 144          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_CHLRE (Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 47/140 (33.57%), Postives = 77/140 (55.00%), Query Frame = 3
Query:   48 ETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            E  T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL +  + M+     + L+ AF+  + DG+  ++ AEL  V+ NLG  LS  +  E+I   D DGDG V++E+F
Sbjct:    6 EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKLSEEEVDEMIREADVDGDGQVNYEEF 145          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML16_ORYSJ (Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica GN=CML16 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.237e-17
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 3
Query:   90 FRAFDSDNDGSITGAELSGIFNSVGYRASEE----DVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQ 470
            F  FD+D DG I+ +EL+ +  ++    SE     +V  MM + DT+ DG + L EF   + +          L+AAF+  ++DGD  +T AEL +V+  +G G S  +C+ +IAS+D DGDG V FE+F+
Sbjct:   32 FTRFDADGDGRISPSELAAVTRAIAPPPSESAGGREVAAMMNELDTDRDGFVDLGEFAAFHGRGRGDAEHEAELRAAFDVYDVDGDGRITAAELGKVLGRIGEGCSAEECERMIASVDVDGDGCVGFEEFK 162          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_PNECA (Calmodulin OS=Pneumocystis carinii PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.237e-17
Identity = 46/142 (32.39%), Postives = 77/142 (54.23%), Query Frame = 3
Query:   42 SEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            +E+  T   +    E F  FD D DGSIT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF+  + DG+ I++ AEL  V+ NLG  L+  +  E+I   D DGDG + + +F
Sbjct:    3 NEQNLTEEQISEFKEAFSLFDKDGDGSITTKELGIVMRSLGQNPTEAELQDMVNEVDADGNGTIDFPEFLAMMARKMKDVDSEEEIREAFKVFDKDGNGIISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGVIDYSEF 144          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_BLAEM (Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++  M+ + D + +G +   EFL M  + M+       +K AF+  + DG+  ++ AEL  V+ NLG  LS  + +E+I   D DGDG +++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELLVMINEVDADGNGTIDFPEFLTMMARKMKDSDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLSEDEVEEMIREADVDGDGQINYEEF 142          
The following BLAST results are available for this feature:
BLAST of DR908552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
CALM_PATSP2.492e-1834.31Calmodulin OS=Patinopecten sp. PE=1 SV=2[more]
CALM_SUBDO4.251e-1833.58Calmodulin OS=Suberites domuncula PE=2 SV=3[more]
CML24_ARATH7.251e-1836.30Calcium-binding protein CML24 OS=Arabidopsis thali... [more]
CALM_STRIE9.470e-1830.87Calmodulin OS=Strongylocentrotus intermedius PE=2 ... [more]
CALM_PYUSP9.470e-1833.58Calmodulin OS=Pyuridae sp. PE=1 SV=2[more]
CALM_DICDI9.470e-1832.39Calmodulin OS=Dictyostelium discoideum GN=calA PE=... [more]
CALM_CHLRE9.470e-1833.57Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2[more]
CML16_ORYSJ1.237e-1737.40Probable calcium-binding protein CML16 OS=Oryza sa... [more]
CALM_PNECA1.237e-1732.39Calmodulin OS=Pneumocystis carinii PE=3 SV=1[more]
CALM_BLAEM1.615e-1733.58Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16680 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908552 ID=DR908552; Name=DR908552; organism=Citrus sinensis; type=EST; length=618bp
GTAATTGCAGAAGTTGATCCATGGCTGAATCCAGGCCTCTCTCCGAGGAA
ACCGAGACATTGAACCATGTCTTAAGTCTAGTGGAGACTTTCAGAGCCTT
TGATTCGGACAACGATGGGTCGATCACTGGTGCTGAGCTCTCTGGAATAT
TCAATTCAGTTGGTTACAGGGCTAGCGAGGAAGATGTCAGGGAAATGATG
CGGCAAGGTGACACGAACAACGACGGATTGCTGAGCTTGGAGGAGTTCTT
GGAGATGAACACCAAAGACATGGAGCTTGGAAGCCTTGGGAATTTGCTCA
AGGCAGCTTTTGAATCTCTGAATCTTGATGGTGATGATATCTTAACTGGA
GCAGAGCTGCATGAAGTTATTGAAAATTTAGGAGTTGGGTTGTCATTAGC
TGATTGCCAGGAGATTATTGCTTCCATGGATGGAGACGGTGATGGTGCTG
TTAGCTTTGAGGACTTCCAATTAATAGTTAATTCCCTCCTCTAGAATCTC
AACAGTCAACACAACGTATGTAATGCTACATGTTATATATATATATATAT
ATATAGGAATAAACAATCACTAGCGTGTAGATCTATTACCATGCATCCTC
CATTACTCTGCCGGCTCT
back to top