DR908552

Overview
NameDR908552
Unique NameDR908552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM2_BRAFL (Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=2 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16
Identity = 43/137 (31.39%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D +G+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF+  + DG+  ++ AEL  V+ N G  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGNGNITTKELGTVMRSLGQNPTEGELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDKDGNGFISAAELRHVMTNPGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML4_ARATH (Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 49/146 (33.56%), Postives = 85/146 (58.22%), Query Frame = 3
Query:   36 PLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGV--GLSLADCQEIIASMDGDGDGAVSFEDF 467
            P  +E+ET + V  L   F+ FD + DG IT  EL+    ++G    ++D+ +M+++ D N DG + + EF  +    +E    G+ ++ AF   + DGD  +T  EL+ V+ +LG+  G +L  C+E+I  +D DGDG V++++F
Sbjct:   39 PPPDESETESPV-DLKRVFQMFDKNGDGRITKEELNDSLENLGIFMPDKDLIQMIQKMDANGDGCVDINEFESLYGSIVEEKEEGD-MRDAFNVFDQDGDGFITVEELNSVMTSLGLKQGKTLECCKEMIMQVDEDGDGRVNYKEF 182          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_MAIZE (Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG IT  EL  +  S+G   +E ++++M+ + D + +G +   E L +  + M+       LK AF   + D +  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    6 TDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPELLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_CANAL (Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 42/128 (32.81%), Postives = 70/128 (54.69%), Query Frame = 3
Query:   84 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            E F  FD D+DG IT  EL  +  S+G   SE ++ +M+ + D N+DG +   EFL M  + M+       +  AF+  + +GD  ++ AEL  ++ ++G  LS AD  ++I   D + DG +  ++F
Sbjct:   15 EAFSLFDKDSDGKITTKELGTVMRSLGQNPSESELTDMINEVDVNSDGSIDFPEFLTMMARKMKDTDSEAEIAEAFKVFDRNGDGKISAAELRHLLTSIGEKLSDADVDQMIKEADTNNDGEIDIQEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_SCHPO (Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 41/132 (31.06%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   84 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQLIV 479
            E F  FD D DG+IT  EL  +  S+G   +  ++++M+ + D + +G +   EFL M  + M+       ++ AF+  + DG+  +T  EL  V+ +LG  LS  +  ++I   D DGDG +++E+F  ++
Sbjct:   16 EAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVI 147          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML11_ORYSJ (Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica GN=CML11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.579e-15
Identity = 44/158 (27.85%), Postives = 84/158 (53.16%), Query Frame = 3
Query:    3 NCRS*SMAESRPLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDM---ELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            +C +    + +   EE    + +  L E FR+FD + DGS+T  EL  +  S+G + S +++  ++++ DTN++GL+   EF+ +   ++         + ++  F   + DG+  +T AEL   +  LG  L++ +   +I   D DGDG +SF++F
Sbjct:   40 SCSAQQQQQQQQQQEEPLGDDQLGELREIFRSFDRNGDGSLTQLELGSLLRSLGLKPSTDELDSLIQRADTNSNGLIEFSEFVALVAPELLYDRAPYSEDQIRRLFNIFDRDGNGFITAAELAHSMAKLGHALTVKELTGMIKEADTDGDGRISFQEF 197          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML8_ARATH (Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.399e-15
Identity = 41/143 (28.67%), Postives = 79/143 (55.24%), Query Frame = 3
Query:   39 LSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            + E   T + +    E F  FD D DG IT  EL+ +  S+    +E+++ +++ + D++++G +   EFL +  K ++       LK AF+  + D +  ++ +EL  V+ NLG  L+  + +++I   D DGDG V++++F
Sbjct:    1 MEETALTKDQITEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEQELHDIITEIDSDSNGTIEFAEFLNLMAKKLQESDAEEELKEAFKVFDKDQNGYISASELSHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYDEF 143          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML11_ARATH (Calmodulin-like protein 11 OS=Arabidopsis thaliana GN=CML11 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.399e-15
Identity = 40/137 (29.20%), Postives = 75/137 (54.74%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   ++   E F  FD D DG IT  EL+ +  S+    +E+++++M+ + D++ +G +   EFL +    ++       LK AF+  + D +  ++ +EL  V+ NLG  L+  +  ++I   D DGDG V++++F
Sbjct:   29 TQEQIMEFKEAFCLFDKDGDGCITADELATVIRSLDQNPTEQELQDMITEIDSDGNGTIEFSEFLNLMANQLQETDADEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDGDGQVNYDEF 165          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_MALDO (Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.399e-15
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T + +    E F  FD D DG IT  EL  +  S+G   +E ++++M+ + D + +G +   E L +  + M+       LK AF   + D +  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEPLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_FAGSY (Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 4.399e-15
Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T + +    E F  FD D DG IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL +  + M+       LK AF   + D +  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDRDGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLT-DEVDEMIREADVDGDGQINYEEF 141          
The following BLAST results are available for this feature:
BLAST of DR908552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
CALM2_BRAFL8.864e-1631.39Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=... [more]
CML4_ARATH1.512e-1533.56Calmodulin-like protein 4 OS=Arabidopsis thaliana ... [more]
CALM_MAIZE1.512e-1531.39Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2[more]
CALM_CANAL1.512e-1532.81Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2[more]
CALM_SCHPO1.975e-1531.06Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE... [more]
CML11_ORYSJ2.579e-1527.85Probable calcium-binding protein CML11 OS=Oryza sa... [more]
CML8_ARATH4.399e-1528.67Calmodulin-like protein 8 OS=Arabidopsis thaliana ... [more]
CML11_ARATH4.399e-1529.20Calmodulin-like protein 11 OS=Arabidopsis thaliana... [more]
CALM_MALDO4.399e-1531.39Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2[more]
CALM_FAGSY4.399e-1532.12Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16680 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908552 ID=DR908552; Name=DR908552; organism=Citrus sinensis; type=EST; length=618bp
GTAATTGCAGAAGTTGATCCATGGCTGAATCCAGGCCTCTCTCCGAGGAA
ACCGAGACATTGAACCATGTCTTAAGTCTAGTGGAGACTTTCAGAGCCTT
TGATTCGGACAACGATGGGTCGATCACTGGTGCTGAGCTCTCTGGAATAT
TCAATTCAGTTGGTTACAGGGCTAGCGAGGAAGATGTCAGGGAAATGATG
CGGCAAGGTGACACGAACAACGACGGATTGCTGAGCTTGGAGGAGTTCTT
GGAGATGAACACCAAAGACATGGAGCTTGGAAGCCTTGGGAATTTGCTCA
AGGCAGCTTTTGAATCTCTGAATCTTGATGGTGATGATATCTTAACTGGA
GCAGAGCTGCATGAAGTTATTGAAAATTTAGGAGTTGGGTTGTCATTAGC
TGATTGCCAGGAGATTATTGCTTCCATGGATGGAGACGGTGATGGTGCTG
TTAGCTTTGAGGACTTCCAATTAATAGTTAATTCCCTCCTCTAGAATCTC
AACAGTCAACACAACGTATGTAATGCTACATGTTATATATATATATATAT
ATATAGGAATAAACAATCACTAGCGTGTAGATCTATTACCATGCATCCTC
CATTACTCTGCCGGCTCT
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