DR908552

Overview
NameDR908552
Unique NameDR908552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML20_ORYSJ (Probable calcium-binding protein CML20 OS=Oryza sativa subsp. japonica GN=CML20 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.110e-17
Identity = 54/151 (35.76%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   36 PLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENL---GVGLSLADCQEIIASMDGDGDGAVSFEDFQLIV 479
            PLS E E       L+  FR FD+D DG I+ AE+        Y  S ++  EM+   D + DG +S+EE   +    ME G L + L+AAF+  + DG+ ++T  EL   +  L   G+ L+   C EI+A++D DGDG +SF++F+ ++
Sbjct:   33 PLSLEREAEPE---LIRVFRCFDTDGDGLISAAEMREF-----YGCSVDEAEEMVAAADRDGDGFVSIEELRAV----MEGGGL-DALRAAFDEYDEDGNGVITAEELRRALRRLNLDGMDLTAEQCAEIVAAVDSDGDGVISFDEFKAMM 170          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.110e-17
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  K M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_AGABI (Calmodulin OS=Agaricus bisporus PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.110e-17
Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = 3
Query:   39 LSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            LSEE      +    E F  FD D DG+IT  EL  +  S+G   S+ ++ +M+ + D + +G +   EFL M  + M        +K AF+  + DG+  ++ AEL  V+ NLG  L+ ++  E+I   D DGDG +++E+F
Sbjct:    5 LSEE-----QISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPSQAELEDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDSEVDEMIREADVDGDGQINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 45/133 (33.83%), Postives = 76/133 (57.14%), Query Frame = 3
Query:   78 LVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGV--GLSLADCQEIIASMDGDGDGAVSFEDFQ 470
            L   F+ FD + DG I   EL   F SVG    E ++ EM+ + D N DG + ++EF  +  + +E       ++ AF   + +GD  +T  EL  V+ ++G+  G +L DC+++I+ +D DGDG V+F++F+
Sbjct:    6 LSRVFQMFDKNGDGKIAKNELKDFFKSVGIMVPENEINEMIAKMDVNGDGAMDIDEFGSLYQEMVEEKEEEEDMREAFRVFDQNGDGFITDEELRSVLASMGLKQGRTLEDCKKMISKVDVDGDGMVNFKEFK 138          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_PHYPO (Calmodulin OS=Physarum polycephalum PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M        ++ AF+  + DG+  ++ AEL  V+ NLG  LS  +  E+I   D DGDG V++++F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGNITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMADTDTEEEIREAFKVFDKDGNGFISAAELRHVMTNLGEKLSDEEVDEMIREADVDGDGQVNYDEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_HALOK (Calmodulin OS=Halichondria okadai PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = 3
Query:   39 LSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            LSEE      +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    5 LSEE-----QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_EUGGR (Calmodulin OS=Euglena gracilis PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 46/140 (32.86%), Postives = 75/140 (53.57%), Query Frame = 3
Query:   54 ETLNH--VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            E L H  +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D +  G +   EFL + ++ M        +K AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    3 EALTHEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMSRKMHDTDTEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_CIOIN (Calmodulin OS=Ciona intestinalis PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALMB_HALRO (Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica GN=CML18 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 48/144 (33.33%), Postives = 76/144 (52.78%), Query Frame = 3
Query:   78 LVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMN-------------TKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQ 470
            L + FR +D++ DG I+  EL+ +  ++G      +VR MM + D++ DG + L EF   +              KD E  S   L + AF   + D +  ++  ELH V+  LG   S+ADC  +I S+D DGDG V+F++F+
Sbjct:    6 LEQVFRRYDANGDGKISAEELASVLRALGAPLGPGEVRRMMDEMDSDRDGFVDLSEFAAFHCGPTPAHGGKGGDAKDQEAASEAEL-REAFRMYDADSNGKISARELHRVLRQLGDKCSVADCSRMIRSVDADGDGCVNFDEFK 148          
The following BLAST results are available for this feature:
BLAST of DR908552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
CML20_ORYSJ2.110e-1735.76Probable calcium-binding protein CML20 OS=Oryza sa... [more]
CALM_ELEEL2.110e-1733.58Calmodulin OS=Electrophorus electricus GN=calm PE=... [more]
CALM_AGABI2.110e-1733.57Calmodulin OS=Agaricus bisporus PE=1 SV=2[more]
CML2_ARATH2.755e-1733.83Calmodulin-like protein 2 OS=Arabidopsis thaliana ... [more]
CALM_PHYPO2.755e-1732.85Calmodulin OS=Physarum polycephalum PE=2 SV=3[more]
CALM_HALOK2.755e-1733.57Calmodulin OS=Halichondria okadai PE=2 SV=3[more]
CALM_EUGGR2.755e-1732.86Calmodulin OS=Euglena gracilis PE=1 SV=2[more]
CALM_CIOIN2.755e-1732.85Calmodulin OS=Ciona intestinalis PE=2 SV=3[more]
CALMB_HALRO2.755e-1732.85Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3[more]
CML18_ORYSJ3.599e-1733.33Probable calcium-binding protein CML18 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16680 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908552 ID=DR908552; Name=DR908552; organism=Citrus sinensis; type=EST; length=618bp
GTAATTGCAGAAGTTGATCCATGGCTGAATCCAGGCCTCTCTCCGAGGAA
ACCGAGACATTGAACCATGTCTTAAGTCTAGTGGAGACTTTCAGAGCCTT
TGATTCGGACAACGATGGGTCGATCACTGGTGCTGAGCTCTCTGGAATAT
TCAATTCAGTTGGTTACAGGGCTAGCGAGGAAGATGTCAGGGAAATGATG
CGGCAAGGTGACACGAACAACGACGGATTGCTGAGCTTGGAGGAGTTCTT
GGAGATGAACACCAAAGACATGGAGCTTGGAAGCCTTGGGAATTTGCTCA
AGGCAGCTTTTGAATCTCTGAATCTTGATGGTGATGATATCTTAACTGGA
GCAGAGCTGCATGAAGTTATTGAAAATTTAGGAGTTGGGTTGTCATTAGC
TGATTGCCAGGAGATTATTGCTTCCATGGATGGAGACGGTGATGGTGCTG
TTAGCTTTGAGGACTTCCAATTAATAGTTAATTCCCTCCTCTAGAATCTC
AACAGTCAACACAACGTATGTAATGCTACATGTTATATATATATATATAT
ATATAGGAATAAACAATCACTAGCGTGTAGATCTATTACCATGCATCCTC
CATTACTCTGCCGGCTCT
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