DR908552

Overview
NameDR908552
Unique NameDR908552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM1_BRAFL (Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALL3_HUMAN (Calmodulin-like protein 3 OS=Homo sapiens GN=CALML3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   V    E F  FD D DG IT  EL  +  S+G   +E ++R+MM + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+  LG  LS  +  E+I + D DGDG V++E+F
Sbjct:    6 TEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAADTDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_XENLA (Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_TRYCR (Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = 3
Query:   84 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D +  G +   EFL +  + M+       +K AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:   15 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_TORCA (Calmodulin OS=Torpedo californica PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_STYLE (Calmodulin OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 44/137 (32.12%), Postives = 75/137 (54.74%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL +  + M+       L  AF+  + DG+ +++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELVEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGHINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_STIJA (Calmodulin OS=Stichopus japonicus PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_SHEEP (Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_RAT (Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_RABIT (Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
The following BLAST results are available for this feature:
BLAST of DR908552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
CALM1_BRAFL3.599e-1732.85Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2[more]
CALL3_HUMAN3.599e-1735.04Calmodulin-like protein 3 OS=Homo sapiens GN=CALML... [more]
CALM_XENLA4.700e-1732.85Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2[more]
CALM_TRYCR4.700e-1733.59Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2[more]
CALM_TORCA4.700e-1732.85Calmodulin OS=Torpedo californica PE=1 SV=2[more]
CALM_STYLE4.700e-1732.12Calmodulin OS=Stylonychia lemnae PE=3 SV=2[more]
CALM_STIJA4.700e-1732.85Calmodulin OS=Stichopus japonicus PE=1 SV=2[more]
CALM_SHEEP4.700e-1732.85Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3[more]
CALM_RAT4.700e-1732.85Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2[more]
CALM_RABIT4.700e-1732.85Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16680 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908552 ID=DR908552; Name=DR908552; organism=Citrus sinensis; type=EST; length=618bp
GTAATTGCAGAAGTTGATCCATGGCTGAATCCAGGCCTCTCTCCGAGGAA
ACCGAGACATTGAACCATGTCTTAAGTCTAGTGGAGACTTTCAGAGCCTT
TGATTCGGACAACGATGGGTCGATCACTGGTGCTGAGCTCTCTGGAATAT
TCAATTCAGTTGGTTACAGGGCTAGCGAGGAAGATGTCAGGGAAATGATG
CGGCAAGGTGACACGAACAACGACGGATTGCTGAGCTTGGAGGAGTTCTT
GGAGATGAACACCAAAGACATGGAGCTTGGAAGCCTTGGGAATTTGCTCA
AGGCAGCTTTTGAATCTCTGAATCTTGATGGTGATGATATCTTAACTGGA
GCAGAGCTGCATGAAGTTATTGAAAATTTAGGAGTTGGGTTGTCATTAGC
TGATTGCCAGGAGATTATTGCTTCCATGGATGGAGACGGTGATGGTGCTG
TTAGCTTTGAGGACTTCCAATTAATAGTTAATTCCCTCCTCTAGAATCTC
AACAGTCAACACAACGTATGTAATGCTACATGTTATATATATATATATAT
ATATAGGAATAAACAATCACTAGCGTGTAGATCTATTACCATGCATCCTC
CATTACTCTGCCGGCTCT
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