DR908552

Overview
NameDR908552
Unique NameDR908552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_PONAB (Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
[Close]
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_PLECO (Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = 3 
Query:   39 LSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            LSEE      +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M        +K AF+  + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    5 LSEE-----QISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDNEVDEMIREADIDGDGQINYEEF 142
[Close]
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_PERFV (Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
[Close]
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_ONCSP (Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
[Close]
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_MOUSE (Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
[Close]
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_HUMAN (Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
[Close]
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_GECJA (Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
[Close]
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_DANRE (Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
[Close]
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_CTEID (Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
[Close]
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_CHICK (Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
The following BLAST results are available for this feature:
BLAST of DR908552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
CALM_PONAB4.700e-1732.85Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3[more]
CALM_PLECO4.700e-1733.57Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 S... [more]
CALM_PERFV4.700e-1732.85Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3[more]
CALM_ONCSP4.700e-1732.85Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2[more]
CALM_MOUSE4.700e-1732.85Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2[more]
CALM_HUMAN4.700e-1732.85Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2[more]
CALM_GECJA4.700e-1732.85Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV... [more]
CALM_DANRE4.700e-1732.85Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3[more]
CALM_CTEID4.700e-1732.85Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2... [more]
CALM_CHICK4.700e-1732.85Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16680 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908552 ID=DR908552; Name=DR908552; organism=Citrus sinensis; type=EST; length=618bp
GTAATTGCAGAAGTTGATCCATGGCTGAATCCAGGCCTCTCTCCGAGGAA
ACCGAGACATTGAACCATGTCTTAAGTCTAGTGGAGACTTTCAGAGCCTT
TGATTCGGACAACGATGGGTCGATCACTGGTGCTGAGCTCTCTGGAATAT
TCAATTCAGTTGGTTACAGGGCTAGCGAGGAAGATGTCAGGGAAATGATG
CGGCAAGGTGACACGAACAACGACGGATTGCTGAGCTTGGAGGAGTTCTT
GGAGATGAACACCAAAGACATGGAGCTTGGAAGCCTTGGGAATTTGCTCA
AGGCAGCTTTTGAATCTCTGAATCTTGATGGTGATGATATCTTAACTGGA
GCAGAGCTGCATGAAGTTATTGAAAATTTAGGAGTTGGGTTGTCATTAGC
TGATTGCCAGGAGATTATTGCTTCCATGGATGGAGACGGTGATGGTGCTG
TTAGCTTTGAGGACTTCCAATTAATAGTTAATTCCCTCCTCTAGAATCTC
AACAGTCAACACAACGTATGTAATGCTACATGTTATATATATATATATAT
ATATAGGAATAAACAATCACTAGCGTGTAGATCTATTACCATGCATCCTC
CATTACTCTGCCGGCTCT
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