DR908552

Overview
NameDR908552
Unique NameDR908552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_TETPY (Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 44/137 (32.12%), Postives = 75/137 (54.74%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL +  + M+       L  AF+  + DG+ +++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL +  + M+       L  AF+  + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_PFIPI (Calmodulin OS=Pfiesteria piscicida PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL +  + M+       L  AF+  + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_PARTE (Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 45/140 (32.14%), Postives = 76/140 (54.29%), Query Frame = 3
Query:   48 ETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            E  T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL +  + M+       L  AF+  + DG+ +++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    3 EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_ORYLA (Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 44/128 (34.38%), Postives = 72/128 (56.25%), Query Frame = 3
Query:   84 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    8 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 135          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_KARMI (Calmodulin OS=Karlodinium micrum PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL +  + M+       L  AF+  + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_ALEFU (Calmodulin OS=Alexandrium fundyense PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL +  + M+       L  AF+  + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM1_SOLTU (Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 46/140 (32.86%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   48 ETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            E  T   +    E F  FD D DG IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL +  + M+       LK AF+  + D +  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    3 EQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEADADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM1_ARATH (Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   84 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQLIV 479
            E F  FD D DG IT  EL  +  S+G   +E ++++M+ + D + +G +   EFL +  K M+       LK AF   + D +  ++ AEL  V+ NLG  L+  + +E+I   D DGDG +++E+F  I+
Sbjct:   15 EAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEEFVKIM 146          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CABO_LOLPE (Squidulin OS=Loligo pealeii PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 3
Query:   69 VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLG-VGLSLADCQEIIASMDGDGDGAVSFEDF 467
            +  + + F  FD D DG IT  EL  +  S+G   S+ ++ EM+R+ DT+ +G +   EF+EM  K M        ++ AF   + DG+ ++T AEL +V+ N     L+  +  E+I   D DGDG V++E+F
Sbjct:    9 IAEIKDAFDMFDIDGDGQITSKELRSVMKSLGRTPSDAELEEMIREVDTDGNGTIEYAEFVEMMAKQMGPTDPEKEMREAFRVFDKDGNGLITAAELRQVMANFSDEKLTSEEISEMIREADIDGDGMVNYEEF 142          
The following BLAST results are available for this feature:
BLAST of DR908552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
CALM_TETPY8.017e-1732.12Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4[more]
CALM_PROMN8.017e-1732.12Calmodulin OS=Prorocentrum minimum PE=2 SV=1[more]
CALM_PFIPI8.017e-1732.12Calmodulin OS=Pfiesteria piscicida PE=2 SV=1[more]
CALM_PARTE8.017e-1732.14Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 S... [more]
CALM_ORYLA8.017e-1734.38Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm... [more]
CALM_KARMI8.017e-1732.12Calmodulin OS=Karlodinium micrum PE=2 SV=1[more]
CALM_ALEFU8.017e-1732.12Calmodulin OS=Alexandrium fundyense PE=2 SV=1[more]
CALM1_SOLTU8.017e-1732.86Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=... [more]
CALM1_ARATH8.017e-1734.09Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=... [more]
CABO_LOLPE8.017e-1734.33Squidulin OS=Loligo pealeii PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16680 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908552 ID=DR908552; Name=DR908552; organism=Citrus sinensis; type=EST; length=618bp
GTAATTGCAGAAGTTGATCCATGGCTGAATCCAGGCCTCTCTCCGAGGAA
ACCGAGACATTGAACCATGTCTTAAGTCTAGTGGAGACTTTCAGAGCCTT
TGATTCGGACAACGATGGGTCGATCACTGGTGCTGAGCTCTCTGGAATAT
TCAATTCAGTTGGTTACAGGGCTAGCGAGGAAGATGTCAGGGAAATGATG
CGGCAAGGTGACACGAACAACGACGGATTGCTGAGCTTGGAGGAGTTCTT
GGAGATGAACACCAAAGACATGGAGCTTGGAAGCCTTGGGAATTTGCTCA
AGGCAGCTTTTGAATCTCTGAATCTTGATGGTGATGATATCTTAACTGGA
GCAGAGCTGCATGAAGTTATTGAAAATTTAGGAGTTGGGTTGTCATTAGC
TGATTGCCAGGAGATTATTGCTTCCATGGATGGAGACGGTGATGGTGCTG
TTAGCTTTGAGGACTTCCAATTAATAGTTAATTCCCTCCTCTAGAATCTC
AACAGTCAACACAACGTATGTAATGCTACATGTTATATATATATATATAT
ATATAGGAATAAACAATCACTAGCGTGTAGATCTATTACCATGCATCCTC
CATTACTCTGCCGGCTCT
back to top