DR908543

Overview
NameDR908543
Unique NameDR908543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: PEBP1_MOUSE (Phosphatidylethanolamine-binding protein 1 OS=Mus musculus GN=Pebp1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 2
Query:  146 GHELMPAVIIAKPR-VDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSY--ETPKPVVGIHRYVFILFKQRGRQTVRPPA-------SRDHFNTRQFSAENGLGLPVAAVYFNAQ 523
            G  L P  ++ +P  +   G D    YTL++TDPDAPS  DP  RE  H++V ++ G  D S G  +  Y    P    G+HRYV+++++Q    +   P        +R  F    F  +  LG PVA   + A+
Sbjct:   38 GKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKG-NDISSGTVLSDYVGSGPPSGTGLHRYVWLVYEQEQPLSCDEPILSNKSGDNRGKFKVETFRKKYNLGAPVAGTCYQAE 172          
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: PEBP1_BOVIN (Phosphatidylethanolamine-binding protein 1 OS=Bos taurus GN=PEBP1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 49/153 (32.03%), Postives = 71/153 (46.41%), Query Frame = 2
Query:   95 PSVKMNVIYNSNKQVANGHELMPAVIIAKPR-VDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSY--ETPKPVVGIHRYVFILFKQRGRQTVRPP----ASRDH---FNTRQFSAENGLGLPVAAVYFNAQ 523
            P   + V Y   +    G  L P  +  +P  +   G D    YTL++TDPDAPS  DP  RE  H++V ++ G  + S G  +  Y    P    G+HRYV+++++Q G      P     S DH   F    F  +  LG PVA   + A+
Sbjct:   21 PQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKG-NNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAE 172          
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: OBA5_DROME (Putative odorant-binding protein A5 OS=Drosophila melanogaster GN=a5 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 44/162 (27.16%), Postives = 79/162 (48.77%), Query Frame = 2
Query:   65 VVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPV--VGIHRYVFILFKQ-------RGRQTVRPPASRDHFNTRQFSAENGLGLPVAAVYFNAQ 523
            V+ +++D   P   + + Y++   +  G    P  +  +PR+D    D  S YT++M  PDAP+  +P  R  LHW+V ++PG  D   G+ I  Y  P P    GI RY+ ++++Q         +  +       +F+  +F+ +  +G PVA   F ++
Sbjct:   35 VIPEILDE-PPRELLRIKYDNTIDIEEGKTYTPTELKFQPRLDWNA-DPESFYTVLMICPDAPNRENPMYRSWLHWLVVNVPG-LDIMKGQPISEYFGPLPPKDSGIQRYLILVYQQSDKLDFDEKKMELSNADGHSNFDVMKFTQKYEMGSPVAGNIFQSR 193          
The following BLAST results are available for this feature:
BLAST of DR908543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PEBP1_MOUSE2.982e-1132.35Phosphatidylethanolamine-binding protein 1 OS=Mus ... [more]
PEBP1_BOVIN6.644e-1132.03Phosphatidylethanolamine-binding protein 1 OS=Bos ... [more]
OBA5_DROME8.677e-1127.16Putative odorant-binding protein A5 OS=Drosophila ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16671 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908543 ID=DR908543; Name=DR908543; organism=Citrus sinensis; type=EST; length=619bp
AGCTTCCATTATTCTCAGCTTACTAAAAATGTCAAGAACGACTGATCCAC
TAGCTGTTGGACGCGTGGTGGGAGATGTGGTGGATACTTTTATTCCTAGT
GTGAAGATGAACGTGATTTATAACTCTAATAAGCAAGTTGCTAATGGCCA
CGAGCTTATGCCTGCTGTCATTATTGCTAAGCCTAGAGTCGATATTGGCG
GCGAGGACATGAGATCAGCTTATACCTTGATTATGACAGACCCTGATGCT
CCAAGCCCTAGTGATCCATGCTTAAGAGAACATCTCCACTGGATGGTGAC
AGACATTCCTGGAACCACTGACGCTTCTTTTGGAAAAGAAATCGTGAGCT
ATGAGACACCAAAACCGGTGGTGGGCATCCACAGATACGTGTTCATATTG
TTTAAGCAGAGAGGCAGGCAAACAGTGAGGCCACCTGCTTCAAGGGACCA
CTTCAACACAAGGCAATTCTCAGCAGAGAATGGCTTAGGCCTCCCTGTTG
CTGCCGTTTACTTCAATGCCCAAAGAGAAACAGCTGCCAGAAGACGATGA
TGATCATTGATTGATTCGTAGAGAAACTTGACGTTGCCTCATGATCGATC
CATTACCAATAAATTTATT
back to top