DR908520 | Citrus Genome Database

Overview


Name	DR908520
Unique Name	DR908520
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	623

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR908520 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.106e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  195 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 422
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.79 bits (312), Expect = 3.544e-28
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 3

Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DR908520 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.668e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  195 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 422
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.405 bits (311), Expect = 4.629e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 3

Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            I LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   13 IALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DR908520 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.668e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  195 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 422
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.405 bits (311), Expect = 4.629e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 3

Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DR908520 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.709e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  195 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 422
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 3

Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DR908520 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.709e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  195 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 422
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 3

Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DR908520 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.137e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 3

Query:  195 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 422
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 123.635 bits (309), Expect = 7.895e-28
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 3

Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DR908520 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.137e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  195 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 422
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 123.635 bits (309), Expect = 7.895e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3

Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DR908520 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.486e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  195 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 422
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3

Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DR908520 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.486e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  195 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 422
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3

Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DR908520 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.486e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  195 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 422
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3

Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of DR908520 vs. ExPASy Swiss-Prot

BLAST of DR908520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98


Match Name	E-value	Identity	Description
UBIQ_ACECL	5.106e-35	96.05	Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1	[more]
UBIQ_TRYCR	6.668e-35	97.37	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_ACACA	6.668e-35	97.37	Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1	[more]
UBIQ_GEOCY	8.709e-35	96.05	Ubiquitin OS=Geodia cydonium PE=3 SV=1	[more]
UBIQ_CAEEL	8.709e-35	96.05	Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ...	[more]
UBIQ_EUPEU	1.137e-34	96.05	Ubiquitin OS=Euplotes eurystomus PE=3 SV=1	[more]
UBIQ_AGLNE	1.137e-34	96.05	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_XENLA	1.486e-34	96.05	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_SPOFR	1.486e-34	96.05	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_RAT	1.486e-34	96.05	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_16648 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_G09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908520 ID=DR908520; Name=DR908520; organism=Citrus sinensis; type=EST; length=623bp
CAATTACTCTTGAGGTTGAAAGTTCTGACACCATCGACAACGTGAAAGCA
AAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGCAGAGGCTCATTTT
TGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACATCC
AGAAAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTGGTGGTATGCAG
ATTTTTGTGAAGACACTCACTGGGAAAACCATCACATTGGAGGTTGAGAG
TTCGGACACAATTGACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGA
TTCCCCCAGACCAGCAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGAT
GGAAGGACTCTTGCTGATTACAACATCCAGAAGGAGTCCACTCTGCATCT
TGTGCTCCGTCTCCGTGGAGGTTTCTGAGTTTGGTCATCTGGGTGTGTGT
GTGTCTTATTTGCTTCGGTTTGTCTTGGTTAATGTTTGCTTGCTATTGGT
GAAATGGCTTAAATAACTATTTGAAGTTTATTTTGGTTGTGGTAGTTGAA
CTCTGTTTCTAAGATATTGATATGGTCCCACTAACGTCCCATTATAATAT
CTAAGAATCTTTTTCTTGAATAA