DR908516

Overview
NameDR908516
Unique NameDR908516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: ATC_ARTSF (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.223e-33
Identity = 84/186 (45.16%), Postives = 111/186 (59.68%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LIT W+ FRY+ IG YVG ATVG    W+         +S  G  L  Y QL++  +C           T  N+ F  +   CE F        T++LSVLV IEM N++N+LSE+ SLL MPPW N WL+ A+ +S  LHF+ILYV   + VF I PL+L EW++VL +S PV+L+DEVLKF+ R
Sbjct:  832 LITGWLFFRYMAIGTYVGAATVGAAAHWFM--------MSPTGPGLNFY-QLSHHLQC-----------TPENEYF--EGIDCEIFSDPH--PMTMALSVLVTIEMLNAINSLSENQSLLVMPPWSNIWLISAICLSMTLHFVILYVEILSTVFQICPLTLTEWIVVLKISFPVLLLDEVLKFVAR 993          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: AT2A1_RANES (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Rana esculenta GN=ATP2A1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.597e-33
Identity = 81/186 (43.55%), Postives = 115/186 (61.83%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRY+ IG YVG ATVG    W+ +        + DG + VT+ QL+++ +C           T  N   +F+   CE F+S      T++LSVLV IEM N+LN+LSE+ SL+ MPPW N WLL ++ +S  LHFLILYV     +F + PL++ +W +VL +S PVIL+DE+LKF+ R
Sbjct:  828 LISGWLFFRYMAIGGYVGAATVGAAAWWFMY--------ADDGPN-VTFYQLSHFMQC-----------TEDNP--DFEGHECEIFESPV--PMTMALSVLVTIEMCNALNSLSENQSLIRMPPWSNFWLLGSICLSMSLHFLILYVEPLPMIFKLTPLNVEQWFIVLKMSFPVILLDELLKFVAR 989          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: AT2A1_RABIT (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Oryctolagus cuniculus GN=ATP2A1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.597e-33
Identity = 82/186 (44.09%), Postives = 113/186 (60.75%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRY+ IG YVG ATVG    W+ +        + DG   VTY+QL ++ +C                  +F+   CE F++ +    T++LSVLV IEM N+LN+LSE+ SL+ MPPWVN WLL ++ +S  LHFLILYV     +F +  L L +WL+VL +SLPVI +DE+LKFI R
Sbjct:  828 LISGWLFFRYMAIGGYVGAATVGAAAWWFMY--------AEDGPG-VTYHQLTHFMQCTEDHP-------------HFEGLDCEIFEAPE--PMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIAR 989          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: AT2A1_HUMAN (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Homo sapiens GN=ATP2A1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.597e-33
Identity = 83/186 (44.62%), Postives = 114/186 (61.29%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRY+ IG YVG ATVG    W+ +        + DG   V Y+QL ++ +C           T  N   +F+   CE F++ +    T++LSVLV IEM N+LN+LSE+ SLL MPPWVN WLL ++ +S  LHFLILYV     +F +  L L +WL+VL +SLPVI +DE+LKF+ R
Sbjct:  828 LISGWLFFRYMAIGGYVGAATVGAAAWWFLY--------AEDGPH-VNYSQLTHFMQC-----------TEDNT--HFEGIDCEVFEAPE--PMTMALSVLVTIEMCNALNSLSENQSLLRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLRALDLTQWLMVLKISLPVIGLDEILKFVAR 989          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: AT2A1_CHICK (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Gallus gallus GN=ATP2A1 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.086e-33
Identity = 84/188 (44.68%), Postives = 113/188 (60.11%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRC--HSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRYL IG YVG ATVG    W+ +        + DG SL TY+QL ++ +C  H+ E               F+   C+ F+S      T++LSVLV IEM N+LN+LSE+ SLL MPPWVN WL+ ++ +S  LHF+ILYV     +F +  L L  WL+VL +S PVIL+DE LKF+ R
Sbjct:  828 LISGWLFFRYLAIGGYVGAATVGAAAWWFLY--------AEDGPSL-TYHQLTHFMQCTHHNAE---------------FEGVDCDIFESPV--PMTMALSVLVTIEMCNALNSLSENQSLLRMPPWVNIWLVGSICLSMSLHFVILYVDPLPMIFKLTHLDLAHWLVVLRISFPVILLDEALKFVAR 989          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: AT2A1_BOVIN (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Bos taurus GN=ATP2A1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.724e-33
Identity = 82/186 (44.09%), Postives = 114/186 (61.29%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRY+ IG YVG ATVG    W+ +        + DG   VTY+QL ++ +C        SP        +F+   CE F++ +    T++LSVLV IEM N+LN+LSE+ SL+ MPPWVN WL+ ++ +S  LHFLILYV     +F +  L L  WL+VL +SLPVI +DE+LKF+ R
Sbjct:  827 LISGWLFFRYMAIGGYVGAATVGAAAWWFLY--------AEDGPH-VTYSQLTHFMKCSEH-----SP--------DFEGVDCEVFEAPQ--PMTMALSVLVTIEMCNALNSLSENQSLVRMPPWVNIWLVGSIGLSMSLHFLILYVDPLPMIFKLQALDLYHWLMVLKISLPVIGLDEILKFVAR 988          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: AT2A1_RAT (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Rattus norvegicus GN=Atp2a1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.558e-33
Identity = 84/186 (45.16%), Postives = 113/186 (60.75%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRY+ IG YVG ATVG    W+ +        + DG   V+Y+QL ++ +C           T  N    FD   CE F++ +    T++LSVLV IEM N+LN+LSE+ SLL MPPWVN WLL ++ +S  LHFLILYV     +F +  L   +WL+VL +SLPVI +DE+LKFI R
Sbjct:  828 LISGWLFFRYMAIGGYVGAATVGAAAWWFLY--------AEDGPH-VSYHQLTHFMQC-----------TEHNP--EFDGLDCEVFEAPE--PMTMALSVLVTIEMCNALNSLSENQSLLRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLRALDFTQWLMVLKISLPVIGLDELLKFIAR 989          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: AT2A1_MOUSE (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Mus musculus GN=Atp2a1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.558e-33
Identity = 84/186 (45.16%), Postives = 113/186 (60.75%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRY+ IG YVG ATVG    W+ +        + DG   V+Y+QL ++ +C           T  N    FD   CE F++ +    T++LSVLV IEM N+LN+LSE+ SLL MPPWVN WLL ++ +S  LHFLILYV     +F +  L   +WL+VL +SLPVI +DE+LKFI R
Sbjct:  828 LISGWLFFRYMAIGGYVGAATVGAAAWWFLY--------AEDGPH-VSYHQLTHFMQC-----------TEHNP--EFDGLDCEVFEAPE--PMTMALSVLVTIEMCNALNSLSENQSLLRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLRALDFTQWLMVLKISLPVIGLDELLKFIAR 989          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: ATC1_ANOGA (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Anopheles gambiae GN=Ca-P60A PE=3 SV=5)

HSP 1 Score: 138.272 bits (347), Expect = 3.012e-32
Identity = 78/186 (41.94%), Postives = 104/186 (55.91%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRY+ IG YVG ATVG    W+                  T  QL+ W   H       S    G +    D   C+ F        T++LSVLV IEM N++N+LSE+ SL+ MPPW N WL+ +M +SF LHF+ILYV   + VF + PL  NEW+ V+  SLPV+L+DE+LKF+ R
Sbjct:  827 LISGWLFFRYMAIGGYVGCATVGGAAWWFMFSE--------------TGPQLSYWQLTHH-----LSCLGGGEEFKGID---CKIFNDPH--PMTMALSVLVTIEMLNAMNSLSENQSLVQMPPWCNIWLIASMCLSFALHFVILYVDVLSTVFQVTPLDGNEWMTVMKFSLPVVLLDEILKFVAR 988          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: ECA3_ARATH (Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA3 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 6.281e-30
Identity = 78/193 (40.41%), Postives = 111/193 (57.51%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGRCTSGWRY 580
            ++T W+ FRYLVIG YVG+ATV  F+ W+ +          DG   +TY++L N+  C   E                   PC  F+      +T++++VLV +EMFN+LN LSE+ SLL + P  N WL+ ++ ++  LH LILYV   A +F + PLS  EW  VL +S PVI+IDE+LKF+ R T G R+
Sbjct:  817 VVTGWLFFRYLVIGVYVGLATVAGFIWWFVYS---------DGGPKLTYSELMNFETCALRETTY----------------PCSIFEDRH--PSTVAMTVLVVVEMFNALNNLSENQSLLVITPRSNLWLVGSIILTMLLHVLILYVHPLAVLFSVTPLSWAEWTAVLYLSFPVIIIDELLKFLSRNT-GMRF 981          
The following BLAST results are available for this feature:
BLAST of DR908516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ATC_ARTSF1.223e-3345.16Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]
AT2A1_RANES1.597e-3343.55Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_RABIT1.597e-3344.09Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_HUMAN1.597e-3344.62Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_CHICK2.086e-3344.68Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_BOVIN2.724e-3344.09Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_RAT3.558e-3345.16Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_MOUSE3.558e-3345.16Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
ATC1_ANOGA3.012e-3241.94Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]
ECA3_ARATH6.281e-3040.41Calcium-transporting ATPase 3, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16644 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908516 ID=DR908516; Name=DR908516; organism=Citrus sinensis; type=EST; length=610bp
ATTGATCACTCCTTGGATTTTATTCCGCTATCTGGTGATTGGATTCTATG
TTGGGGTAGCTACGGTTGGTATATTTGTCATATGGTACACACATGACACA
TTCTTGGGCATTGATCTGAGTGGAGATGGCCACAGTCTCGTCACCTACAA
TCAACTTGCTAACTGGGGTCGCTGCCATTCTTGGGAGAATTTTACAGCGT
CACCCTTTACAGCTGGCAATCAAGTTTTTAATTTTGATAAAGATCCATGC
GAGTATTTCCAGTCTGGGAAAGTTAAGGCAACAACTCTCTCCCTCTCTGT
CTTGGTTGCCATTGAGATGTTCAATTCTCTGAATGCCCTCTCAGAGGACT
CGAGTTTGTTGTCAATGCCCCCATGGGTGAATCCATGGCTGCTTTTGGCC
ATGTCCATCTCATTCGGCCTGCACTTTTTGATCCTTTATGTACCTTTCTT
TGCTCAAGTATTTGGAATTGTTCCTCTCAGTCTGAATGAATGGCTCTTGG
TCTTGGCCGTTTCTTTACCAGTGATTCTAATAGACGAGGTACTCAAGTTC
ATTGGAAGATGTACAAGCGGGTGGCGGTATTCTAGGGCACATAGACCATC
AACAAAGACG
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