DR908516

Overview
NameDR908516
Unique NameDR908516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: ATC1_DUNBI (Cation-transporting ATPase CA1 OS=Dunaliella bioculata GN=CA1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.281e-30
Identity = 83/201 (41.29%), Postives = 113/201 (56.22%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGRCTSGWRYSRAHRPST 604
            ++  W+  RYL+IG YVG+ TV  F+ WY       I     G+  +T++QL ++  C S       P  A        KD CE F S     TT+S+SVLV +EMFN+LN LSEDSSLL +PPW N WL+ A++ S  LHF ILY    A +FG+  LS  EW +V+ +S PVIL+DE++K        W   R   P++
Sbjct:  843 IVNGWLFLRYLIIGMYVGIVTVYGFIWWY-------ISFPEGGN--MTWSQLTHFQACAS------QPGGA--------KD-CEVFHSKH--PTTISMSVLVVVEMFNALNNLSEDSSLLRIPPWDNKWLVGAIATSMALHFGILYTGASA-MFGVTGLSFAEWTMVIKLSAPVILVDEIMK-------AWSRRRQRHPAS 1009          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: ATC_TRYBB (Probable calcium-transporting ATPase OS=Trypanosoma brucei brucei GN=TBA1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.226e-26
Identity = 75/207 (36.23%), Postives = 105/207 (50.72%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANW--GRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPL-------------------SLNEWLLVLAVSLPVILIDEVLKFIGR 559
            ++  W+  RY+VIG YVG+ATVG F+ W+    F         H L TY   ++   G C       A+P TA                        ++LS+LV +EM N+LNALSE++SL+   P  N WLL A+  S  LH +I+YVPFFA++F IVPL                   + ++W  V+  S+PVI +DE+LKFI R
Sbjct:  827 IVNGWLFMRYMVIGVYVGLATVGGFLWWFLRHGF-------SWHDLTTYTACSDMTNGTCL----LLANPQTA----------------------RAIALSILVVVEMLNALNALSENASLIVSRPSSNVWLLFAIFSSLSLHLIIMYVPFFAKLFNIVPLGVDPHVVQQAQPWSILTPTNFDDWKAVIVFSVPVIFLDELLKFITR 1000          
The following BLAST results are available for this feature:
BLAST of DR908516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ATC1_DUNBI6.281e-3041.29Cation-transporting ATPase CA1 OS=Dunaliella biocu... [more]
ATC_TRYBB3.226e-2636.23Probable calcium-transporting ATPase OS=Trypanosom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16644 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908516 ID=DR908516; Name=DR908516; organism=Citrus sinensis; type=EST; length=610bp
ATTGATCACTCCTTGGATTTTATTCCGCTATCTGGTGATTGGATTCTATG
TTGGGGTAGCTACGGTTGGTATATTTGTCATATGGTACACACATGACACA
TTCTTGGGCATTGATCTGAGTGGAGATGGCCACAGTCTCGTCACCTACAA
TCAACTTGCTAACTGGGGTCGCTGCCATTCTTGGGAGAATTTTACAGCGT
CACCCTTTACAGCTGGCAATCAAGTTTTTAATTTTGATAAAGATCCATGC
GAGTATTTCCAGTCTGGGAAAGTTAAGGCAACAACTCTCTCCCTCTCTGT
CTTGGTTGCCATTGAGATGTTCAATTCTCTGAATGCCCTCTCAGAGGACT
CGAGTTTGTTGTCAATGCCCCCATGGGTGAATCCATGGCTGCTTTTGGCC
ATGTCCATCTCATTCGGCCTGCACTTTTTGATCCTTTATGTACCTTTCTT
TGCTCAAGTATTTGGAATTGTTCCTCTCAGTCTGAATGAATGGCTCTTGG
TCTTGGCCGTTTCTTTACCAGTGATTCTAATAGACGAGGTACTCAAGTTC
ATTGGAAGATGTACAAGCGGGTGGCGGTATTCTAGGGCACATAGACCATC
AACAAAGACG
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