DR908492

Overview
NameDR908492
Unique NameDR908492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 1.613e-52
Identity = 107/206 (51.94%), Postives = 133/206 (64.56%), Query Frame = 3
Query:    3 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA  +
Sbjct:   16 NGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCK 219          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.107e-52
Identity = 107/206 (51.94%), Postives = 133/206 (64.56%), Query Frame = 3
Query:    3 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA  +
Sbjct:   16 NGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCK 219          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.107e-52
Identity = 107/206 (51.94%), Postives = 133/206 (64.56%), Query Frame = 3
Query:    3 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA  +
Sbjct:   16 NGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCK 219          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.107e-52
Identity = 107/206 (51.94%), Postives = 133/206 (64.56%), Query Frame = 3
Query:    3 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA  +
Sbjct:   16 NGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCK 219          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 2.751e-52
Identity = 107/206 (51.94%), Postives = 133/206 (64.56%), Query Frame = 3
Query:    3 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            NG    + ++++TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +L   WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA S RIIYGGSV GA  +
Sbjct:   16 NGRKNNLGELINTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCK 219          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.693e-52
Identity = 105/206 (50.97%), Postives = 134/206 (65.05%), Query Frame = 3
Query:    3 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            NG  + + ++++TLN  +                     K  L + F V+AQNC+    GAFTGE+S  M+ +    WVILGHSERR +  ES++ +G KVA+ALS  + VI C+GE L+QRE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR+WLK NVS +VA S RIIYGGSV G   +
Sbjct:   15 NGDKKSLTELINTLNSGKISADTEVVCGAPTIYLDFARQK--LDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCK 218          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.693e-52
Identity = 109/207 (52.66%), Postives = 132/207 (63.77%), Query Frame = 3
Query:    3 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI-SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            NG  ++V  IV TL +                       +S++     VAAQNCW    GAFTGE+S  M+ ++   WVILGHSERR +  E +D V +KVA+AL  GLKVIAC+GETLE+RE+G T  VV  QTKA+   I +NW NVVLAYEPVWAIGTGK A+P QAQ+VHA LR WL  N S +VAAS RI YGGSV  A A+
Sbjct:    2 NGDKKQVTDIVETLKKGPLDPNVEVVIGVPAIYLAYV--QSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAIGTGKTASPQQAQDVHASLRNWLSSNASPDVAASVRIQYGGSVTAANAK 206          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.130e-52
Identity = 106/206 (51.46%), Postives = 132/206 (64.08%), Query Frame = 3
Query:    3 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK I + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA  +
Sbjct:   16 NGRKQSLGELIGTLNAAKVPADTKVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVITDNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCK 219          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.130e-52
Identity = 107/202 (52.97%), Postives = 134/202 (66.34%), Query Frame = 3
Query:    3 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNG 608
            NG  + + +++ TLN A+                     K  L +   VAAQNC+    GAFTGE+S  M+ ++   WVILGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK +VS  VA STRIIYGGSV G
Sbjct:   15 NGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQK--LDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTG 214          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 1.783e-51
Identity = 98/158 (62.03%), Postives = 120/158 (75.95%), Query Frame = 3
Query:  147 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            VAAQNC+    GAFTGE+S  M+ +L   WV+LGHSERR +  ES++ +G KV++AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NV+  VA STRIIYGGSV GA  +
Sbjct:   62 VAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCK 219          
The following BLAST results are available for this feature:
BLAST of DR908492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MACFA1.613e-5251.94Triosephosphate isomerase OS=Macaca fascicularis G... [more]
TPIS_PONAB2.107e-5251.94Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR2.107e-5251.94Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]
TPIS_HUMAN2.107e-5251.94Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
TPIS_BOVIN2.751e-5251.94Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_XENTR4.693e-5250.97Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_HELVI4.693e-5252.66Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_GORGO6.130e-5251.46Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_CHICK6.130e-5252.97Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPIS_MOUSE1.783e-5162.03Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16620 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-56_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908492 ID=DR908492; Name=DR908492; organism=Citrus sinensis; type=EST; length=630bp
GCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAA
GCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTT
TGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTG
CCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTT
AGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCA
TTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATA
AAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGA
GAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGA
ACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGT
TGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCT
GCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAA
TGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTG
TAAATGGAGCAATTGCAAGAATTGGCAGCA
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