DR908492

Overview
NameDR908492
Unique NameDR908492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.992e-35
Identity = 84/165 (50.91%), Postives = 98/165 (59.39%), Query Frame = 3
Query:  126 LLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            L  S   + AQNC     GAFTGEVSA M+       VI GHSERR    E+N  V  KV +ALS GL+VI C GETLEQRE G T  VV  Q +     I +  N+V+AYEPVWAIGTGK AT  QA+EVH  +R  + D    E A   RI YGGSV  + A+
Sbjct:   54 LTGSRLALVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAK 218          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.992e-35
Identity = 76/159 (47.80%), Postives = 106/159 (66.67%), Query Frame = 3
Query:  147 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            V A+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA   E+ + + DKV  AL+ GL  I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   + A+
Sbjct:   62 VGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAK 220          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.992e-35
Identity = 76/159 (47.80%), Postives = 106/159 (66.67%), Query Frame = 3
Query:  147 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            V A+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA   E+ + + DKV  AL+ GL  I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   + A+
Sbjct:   62 VGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAK 220          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.213e-35
Identity = 82/160 (51.25%), Postives = 103/160 (64.38%), Query Frame = 3
Query:  135 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSV 602
            S   + AQN  V   GAFTGE+S EML ++   +VILGHSERR L  E+N+ V  KVA A   GL  I CVGETLEQRE+  T+ V+ +Q  A    +    +    +V+AYEPVWAIGTGKVA+ AQAQE HA +R  L   + A VA + RI+YGGS+
Sbjct:   58 SGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIRGLLAKELGANVADAVRILYGGSM 217          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.892e-35
Identity = 81/158 (51.27%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  135 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSV 602
            S   + AQ+      GA+TGEVS  ML+  +  +VI+GHSERRA   E+N+ V  K   ALS GL  I CVGETLEQRE+G T  VV  Q  A+   I+  D   +V+AYEPVWAIGTGK ATP  AQEVH  LR+ L    +A+ A   RI+YGGS+
Sbjct:   56 STIALGAQDVSSHDSGAYTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRRRLHAK-NAQAATEVRILYGGSM 212          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 3
Query:  147 VAAQNCWVRKG-GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSV 602
            V AQ+C ++ G GA TGEVSA+ LV+L   WV++GHSERR +L E+++ V  K A A + GLK + C+GETLE+RE+G T+ VVA Q   + +   +  + + V+AYEPVWAIG+G  ATP QAQEVHA +R  L  +    +A   R++YGGSV
Sbjct:   60 VGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRDQLARS-DRRIAEGVRLLYGGSV 213          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 76/159 (47.80%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  147 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI-AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            V A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA  +E+ + + +KV  AL+  LK I C+GE LE+RE+     VVA Q  ++ +    ++  ++LAYEPVWAIGTGK AT  QAQE+HA +R  + D    EVA +T I+YGGS   + A+
Sbjct:   62 VGAENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGSCKPSNAK 220          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 76/154 (49.35%), Postives = 108/154 (70.13%), Query Frame = 3
Query:  147 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSV 602
            + +QN   ++ GAFTGEVSA ML  +   +VI+GHSERRAL  E++  +  K A+A + GL  I CVGETLE+R+SG+T  +V  Q +A+ +   ++ + N ++AYEPVWAIGTGK A+P QAQ VHA LR++L  +   ++A S R++YGGSV
Sbjct:   58 IGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQFLAKD-DPDIAQSLRLLYGGSV 210          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.981e-34
Identity = 75/159 (47.17%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  147 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI-AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAIAR 620
            V A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA   E+   + +KV  AL+ GL  I C+GE LE+RE+     VVA Q +++ +    ++  ++LAYEPVWAIGTGK A+P QAQE+HA +R  + D    E+A +T I+YGGS   + A+
Sbjct:   62 VGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAK 220          
BLAST of DR908492 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.413e-34
Identity = 78/155 (50.32%), Postives = 99/155 (63.87%), Query Frame = 3
Query:  153 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA 611
            AQ+C V   GAFTGE SA ML      + ++GHSERR +  ES++ V DK A     GL  + C+GETLEQ E+G T AVV  Q +A+  K  I++ +N V+ YEPVWAIGTGK ATP  AQE+ A +R WL +   A VA   +I+YGGSV  A
Sbjct:   63 AQDCDVNTSGAFTGENSAVMLKEFGCKYTLVGHSERRVIHGESSEVVADKFAVTPENGLVPVLCIGETLEQFEAGETKAVVEAQLQAVVTKSGITSLNNAVIGYEPVWAIGTGKTATPEIAQEIPAHIRSWLAEQ-DAAVANKVQILYGGSVKPA 216          
The following BLAST results are available for this feature:
BLAST of DR908492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLPD3.992e-3550.91Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_BACFR3.992e-3547.80Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN3.992e-3547.80Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_MAGSM5.213e-3551.25Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_HERAR8.892e-3551.27Triosephosphate isomerase OS=Herminiimonas arsenic... [more]
TPIS_PSEU51.517e-3449.68Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_BACV81.517e-3447.80Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_ALCBS1.517e-3449.35Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_BACTN1.981e-3447.17Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_VIBSA4.413e-3450.32Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16620 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-56_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908492 ID=DR908492; Name=DR908492; organism=Citrus sinensis; type=EST; length=630bp
GCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAA
GCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTT
TGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTG
CCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTT
AGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCA
TTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATA
AAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGA
GAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGA
ACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGT
TGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCT
GCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAA
TGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTG
TAAATGGAGCAATTGCAAGAATTGGCAGCA
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