DR908489

Overview
NameDR908489
Unique NameDR908489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 1.341e-55
Identity = 95/160 (59.38%), Postives = 130/160 (81.25%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLK 567
            R++M+GLD AGKTT+LYKL +GEV++T+PTIGFNVE VQYKN+ FTVWDVGGQ+++R LWRHY+ NT+G+I+VVDS DR RIG+A++  Q ++ +  + N+  LVFANKQD+  AM+  E+ E LGL  ++NR W IQ TCA  G+GLY+GL+WL+++LK
Sbjct:   19 RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 178          

HSP 2 Score: 21.557 bits (44), Expect = 1.341e-55
Identity = 10/18 (55.56%), Postives = 10/18 (55.56%), Query Frame = 3
Query:   33 MGQAFRKLFDVFFGNSEM 86
            MG    KLF   FGN EM
Sbjct:    1 MGLFASKLFSNLFGNKEM 18          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.575e-55
Identity = 97/161 (60.25%), Postives = 130/161 (80.75%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKE 570
            R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ ++  E Q ++++  + ++V+LVFANKQDM  AM   E+ + LGL  L++R W++Q TCA +G GLY GLDWL+  L +
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.575e-55
Identity = 97/161 (60.25%), Postives = 130/161 (80.75%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKE 570
            R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ ++  E Q ++++  + ++V+LVFANKQDM  AM   E+ + LGL  L++R W++Q TCA +G GLY GLDWL+  L +
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.575e-55
Identity = 97/161 (60.25%), Postives = 130/161 (80.75%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKE 570
            R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ ++  E Q ++++  + ++V+LVFANKQDM  AM   E+ + LGL  L++R W++Q TCA +G GLY GLDWL+  L +
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.057e-55
Identity = 94/159 (59.12%), Postives = 129/159 (81.13%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTL 564
            R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DR+R+ +A+ E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L+ R W+IQ TCA  G+GLY+GL+WL++ +
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNI 177          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 215.312 bits (547), Expect = 2.057e-55
Identity = 96/165 (58.18%), Postives = 131/165 (79.39%), Query Frame = 1
Query:   64 SSLATVRCRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLAS 558
            S L     R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWR+YF NT G+I+VVDS DR+RI +A++E Q+++ +  + ++V+LV ANKQD+  AM   E+ E +GL  + NR W IQ TCA  GDGLY+GL+WL++
Sbjct:   11 SLLGRREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNRPWFIQATCATTGDGLYEGLEWLSN 175          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.057e-55
Identity = 97/163 (59.51%), Postives = 130/163 (79.75%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKEMR 576
            R++M+GLDAAGKTTILYK+ +GEV++T+PTIGFNVE V+++N+ FTVWDVGGQ+K+RPLWRHY++NTDGLI+VVDS DRERI  A++E   +I +  + +++ILVFANKQD+  AM+  EV E L L  ++ R W IQ TCA +GDGLY+G DWL + L   +
Sbjct:   19 RILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNNAK 181          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.021e-54
Identity = 97/160 (60.62%), Postives = 125/160 (78.12%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLK 567
            R++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLY+GL WL S  K
Sbjct:   15 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.021e-54
Identity = 97/160 (60.62%), Postives = 125/160 (78.12%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLK 567
            R++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLY+GL WL S  K
Sbjct:   15 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.021e-54
Identity = 97/160 (60.62%), Postives = 125/160 (78.12%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLK 567
            R++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLY+GL WL S  K
Sbjct:   15 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174          
The following BLAST results are available for this feature:
BLAST of DR908489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARF1_YEAST1.341e-5559.38ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF5_RAT1.575e-5560.25ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE1.575e-5560.25ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN1.575e-5560.25ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF_VIGUN2.057e-5559.12ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF_CANAL2.057e-5558.18ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF1_PLAFA2.057e-5559.51ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF6_RAT1.021e-5460.63ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG1.021e-5460.63ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE1.021e-5460.63ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16617 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908489 ID=DR908489; Name=DR908489; organism=Citrus sinensis; type=EST; length=630bp
AGAAATCATCAACAAGCTCAAAGGGACGGGGAATGGGTCAAGCCTTCCGC
AAACTGTTTGATGTCTTCTTTGGCAACAGTGAGATGCCGGGTTGTGATGT
TAGGTCTGGATGCTGCGGGTAAAACAACCATACTGTACAAGCTGCACATT
GGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAATGTCGAGAAAGT
TCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGGCGGACAAGAGA
AATTGAGGCCACTATGGAGGCATTATTTTAATAACACTGATGGACTGATC
TATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAAGCAAAGCAAGA
ATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAGTGTCATTTTGG
TGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCCCAATGGAAGTA
TGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAATGGCATATTCA
AGGGACTTGTGCACTTAAAGGAGATGGACTTTACCAAGGCTTGGATTGGT
TGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACTCTTCAGTGGGC
ACCTCATCATTCTAGGGATCCAGGTTTACA
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