DR908489

Overview
NameDR908489
Unique NameDR908489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.021e-54
Identity = 97/160 (60.62%), Postives = 125/160 (78.12%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLK 567
            R++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLY+GL WL S  K
Sbjct:   15 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.021e-54
Identity = 96/161 (59.63%), Postives = 129/161 (80.12%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKE 570
            R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERI +     Q ++ +  + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W++Q TCA +G GLY+GLDWL++ L +
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.021e-54
Identity = 96/161 (59.63%), Postives = 129/161 (80.12%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKE 570
            R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERI +     Q ++ +  + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W++Q TCA +G GLY+GLDWL++ L +
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.333e-54
Identity = 97/160 (60.62%), Postives = 125/160 (78.12%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLK 567
            R++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLY+GL WL S  K
Sbjct:   15 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNYK 174          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.333e-54
Identity = 96/163 (58.90%), Postives = 129/163 (79.14%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKEMR 576
            R++M+GLDAAGKTTILYK+ +GEV++T+PTIGFNVE V+++N+ FTVWDVGGQ+K+RPLWRHY++NTDGLI+VVDS DRERI  A++    +I +  + +++ILVFANKQD+  AM+  EV E L L  ++ R W IQ TCA +GDGLY+G DWL + L   +
Sbjct:   19 RILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNNAK 181          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 2.274e-54
Identity = 95/161 (59.01%), Postives = 129/161 (80.12%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKE 570
            R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+++RPLW+HYF NT GLI+VVDS DRERI +   E Q ++    + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W++Q TCA +G GLY+GLDWL++ L +
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 2.274e-54
Identity = 95/161 (59.01%), Postives = 129/161 (80.12%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKE 570
            R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+++RPLW+HYF NT GLI+VVDS DRERI +   E Q ++    + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W++Q TCA +G GLY+GLDWL++ L +
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 8.641e-54
Identity = 96/160 (60.00%), Postives = 124/160 (77.50%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLK 567
            R++M GLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLY+GL WL S  K
Sbjct:   15 RILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTSNYK 174          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.474e-53
Identity = 99/158 (62.66%), Postives = 125/158 (79.11%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLA 555
            R++M+GLDAAGKTTILYKL +GEV++TVPTIGFNVE V+YKN+ FTVWDVGGQ+ +RPLWRHY+ NTD LIYV+DS D E  RI  AK E   ++ +  + ++ +LVFANKQD+  AM+  ++ E LGL +LK R W+IQ TCA  GDGLYQGLDWL+
Sbjct:   19 RILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLS 176          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 3.284e-53
Identity = 91/159 (57.23%), Postives = 127/159 (79.87%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTL 564
            R++M+GLDAAGKTTILY+L +GE+++T+PTIGFNVE V+Y+ + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DR+R+ +A+ E   ++ +  + ++V+LVFANKQD+  AM   E+ +  GL  L+ R W+IQ TCA  G+GLY+GLDWL++ +
Sbjct:   19 RILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
The following BLAST results are available for this feature:
BLAST of DR908489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARF6_HUMAN1.021e-5460.63ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF4_RAT1.021e-5459.63ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_MOUSE1.021e-5459.63ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]
ARF6_CHICK1.333e-5460.63ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF1_PLAFO1.333e-5458.90ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF4_PONAB2.274e-5459.01ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN2.274e-5459.01ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF6_XENLA8.641e-5460.00ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF_GIALA1.474e-5362.66ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF1_CATRO3.284e-5357.23ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16617 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908489 ID=DR908489; Name=DR908489; organism=Citrus sinensis; type=EST; length=630bp
AGAAATCATCAACAAGCTCAAAGGGACGGGGAATGGGTCAAGCCTTCCGC
AAACTGTTTGATGTCTTCTTTGGCAACAGTGAGATGCCGGGTTGTGATGT
TAGGTCTGGATGCTGCGGGTAAAACAACCATACTGTACAAGCTGCACATT
GGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAATGTCGAGAAAGT
TCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGGCGGACAAGAGA
AATTGAGGCCACTATGGAGGCATTATTTTAATAACACTGATGGACTGATC
TATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAAGCAAAGCAAGA
ATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAGTGTCATTTTGG
TGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCCCAATGGAAGTA
TGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAATGGCATATTCA
AGGGACTTGTGCACTTAAAGGAGATGGACTTTACCAAGGCTTGGATTGGT
TGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACTCTTCAGTGGGC
ACCTCATCATTCTAGGGATCCAGGTTTACA
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