DR908458

Overview
NameDR908458
Unique NameDR908458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908458 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.451e-40
Identity = 77/119 (64.71%), Postives = 97/119 (81.51%), Query Frame = 2 
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 358
            +TG+ NKITITNDKGRLSK+EIE+MVQEAEKYKAEDE  +++V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D   + I WLD+N LAE DEFE K KELE +CNPII+ +YQ
Sbjct:  494 STGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEIQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQ 612
[Close]
BLAST of DR908458 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.507e-40
Identity = 75/119 (63.03%), Postives = 99/119 (83.19%), Query Frame = 2 
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 358
            +TG++NKITITNDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
[Close]
BLAST of DR908458 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.507e-40
Identity = 75/119 (63.03%), Postives = 99/119 (83.19%), Query Frame = 2 
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 358
            +TG++NKITITNDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
[Close]
BLAST of DR908458 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 4.507e-40
Identity = 75/119 (63.03%), Postives = 99/119 (83.19%), Query Frame = 2 
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 358
            +TG++NKITITNDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
[Close]
BLAST of DR908458 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.507e-40
Identity = 75/119 (63.03%), Postives = 99/119 (83.19%), Query Frame = 2 
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 358
            +TG++NKITITNDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
[Close]
BLAST of DR908458 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.507e-40
Identity = 75/119 (63.03%), Postives = 99/119 (83.19%), Query Frame = 2 
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 358
            +TG++NKITITNDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
[Close]
BLAST of DR908458 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.507e-40
Identity = 75/119 (63.03%), Postives = 99/119 (83.19%), Query Frame = 2 
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 358
            +TG++NKITITNDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
[Close]
BLAST of DR908458 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.507e-40
Identity = 75/119 (63.03%), Postives = 99/119 (83.19%), Query Frame = 2 
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 358
            +TG++NKITITNDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
[Close]
BLAST of DR908458 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 4.507e-40
Identity = 75/119 (63.03%), Postives = 99/119 (83.19%), Query Frame = 2 
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 358
            +TG++NKITITNDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
[Close]
BLAST of DR908458 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.886e-40
Identity = 74/119 (62.18%), Postives = 97/119 (81.51%), Query Frame = 2 
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 358
            +TG++NKITITNDKGRLSKD+I++MVQEAE+YK+EDE ++ +V AKNALE+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  497 STGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNALESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615
The following BLAST results are available for this feature:
BLAST of DR908458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
HS71B_PIG3.451e-4064.71Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA... [more]
HSP7C_SAGOE4.507e-4063.03Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT4.507e-4063.03Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_PONAB4.507e-4063.03Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]
HSP7C_MOUSE4.507e-4063.03Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]
HSP7C_HUMAN4.507e-4063.03Heat shock cognate 71 kDa protein OS=Homo sapiens ... [more]
HSP7C_HORSE4.507e-4063.03Heat shock cognate 71 kDa protein OS=Equus caballu... [more]
HSP7C_CRIGR4.507e-4063.03Heat shock cognate 71 kDa protein OS=Cricetulus gr... [more]
HSP7C_BOVIN4.507e-4063.03Heat shock cognate 71 kDa protein OS=Bos taurus GN... [more]
HSP72_HUMAN5.886e-4062.18Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16586 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-24_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908458 ID=DR908458; Name=DR908458; organism=Citrus sinensis; type=EST; length=412bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGA
AGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGA
TGTATCAAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATGCT
CCTCCAGCTGGT
back to top