DR908435 | Citrus Genome Database

Overview


Name	DR908435
Unique Name	DR908435
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	641

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.413e-20
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

HSP 2 Score: 82.8037 bits (203), Expect = 1.642e-15
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:   13 IELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

HSP 3 Score: 53.1434 bits (126), Expect = 3.311e-13
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQ
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQ 41

HSP 4 Score: 42.3578 bits (98), Expect = 3.311e-13
Identity = 21/38 (55.26%), Postives = 24/38 (63.16%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LIFAGKQ+ D +T ADY +   S LHLVL LR
Sbjct:   37 PPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.099e-19
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1

Query:  199 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 423
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77

HSP 2 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 195
            I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:   13 IEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77

HSP 3 Score: 53.5286 bits (127), Expect = 7.265e-13
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1

Query:  427 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQ
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 41

HSP 4 Score: 40.817 bits (94), Expect = 7.265e-13
Identity = 21/38 (55.26%), Postives = 24/38 (63.16%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI+AGKQL D +T  DY I+  S LHLVL LR
Sbjct:   37 PPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.215e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 51.6026 bits (122), Expect = 4.541e-12
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQ
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ 41

HSP 4 Score: 40.0466 bits (92), Expect = 4.541e-12
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI++GKQ+ D +T ADY I   S LHLVL LR
Sbjct:   37 PPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.215e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 51.6026 bits (122), Expect = 4.541e-12
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQ
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ 41

HSP 4 Score: 40.0466 bits (92), Expect = 4.541e-12
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI++GKQ+ D +T ADY I   S LHLVL LR
Sbjct:   37 PPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.215e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 51.6026 bits (122), Expect = 4.541e-12
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQ
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ 41

HSP 4 Score: 40.0466 bits (92), Expect = 4.541e-12
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI++GKQ+ D +T ADY I   S LHLVL LR
Sbjct:   37 PPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.215e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 51.6026 bits (122), Expect = 4.541e-12
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQ
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ 41

HSP 4 Score: 40.0466 bits (92), Expect = 4.541e-12
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI++GKQ+ D +T ADY I   S LHLVL LR
Sbjct:   37 PPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.215e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 51.6026 bits (122), Expect = 4.541e-12
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQ
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ 41

HSP 4 Score: 40.0466 bits (92), Expect = 4.541e-12
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI++GKQ+ D +T ADY I   S LHLVL LR
Sbjct:   37 PPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.587e-18
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76

HSP 2 Score: 80.4925 bits (197), Expect = 8.149e-15
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   13 IDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76

HSP 3 Score: 51.2174 bits (121), Expect = 5.899e-12
Identity = 19/41 (46.34%), Postives = 33/41 (80.49%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQ
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQ 41

HSP 4 Score: 40.0466 bits (92), Expect = 5.899e-12
Identity = 20/38 (52.63%), Postives = 23/38 (60.53%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI+ GKQL D +T  DY I+  S LHLVL LR
Sbjct:   37 PPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.028e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76

HSP 2 Score: 77.411 bits (189), Expect = 6.898e-14
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:   13 IDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76

HSP 3 Score: 50.8322 bits (120), Expect = 4.781e-11
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  Q
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQ 41

HSP 4 Score: 37.3502 bits (85), Expect = 4.781e-11
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 3

Query:  546 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            +++ GKQL D  T   YN+++ S LHLVL LR
Sbjct:   43 IVYTGKQLADDLTAKHYNLERGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.343e-17
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 423
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77

HSP 2 Score: 75.485 bits (184), Expect = 2.621e-13
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 195
            I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:   13 IEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77

HSP 3 Score: 50.0618 bits (118), Expect = 8.064e-11
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQ
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQ 41

HSP 4 Score: 37.3502 bits (85), Expect = 8.064e-11
Identity = 18/38 (47.37%), Postives = 24/38 (63.16%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LIF GKQ+ D +  ++Y+I+  S LHLVL LR
Sbjct:   37 PPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALR 74

The following BLAST results are available for this feature:

BLAST of DR908435 vs. ExPASy Swiss-Prot

BLAST of DR908435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98


Match Name	E-value	Identity	Description
NEDD8_CAEEL	8.413e-20	60.53	NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1	[more]
RUB2_ARATH	1.099e-19	61.33	NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN...	[more]
NEDD8_RAT	1.215e-18	56.58	NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1	[more]
NEDD8_RABIT	1.215e-18	56.58	NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1	[more]
NEDD8_MOUSE	1.215e-18	56.58	NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2	[more]
NEDD8_HUMAN	1.215e-18	56.58	NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1	[more]
NEDD8_BOVIN	1.215e-18	56.58	NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1	[more]
RUB3_ORYSJ	1.587e-18	53.95	NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap...	[more]
RUB3_ARATH	1.028e-17	55.26	NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN...	[more]
NEDD8_DICDI	1.343e-17	53.25	NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_16563 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_B10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908435 ID=DR908435; Name=DR908435; organism=Citrus sinensis; type=EST; length=641bp
ATTACTCTCGAAGTTGAGAGCTCCGACACGATCGACAACGTCAAGGCCAA
GATCCAGGACAAGGAAGGGATTCCACCGGACCAGCAGAGGCTGATCTTCG
CAGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACAATATCCAG
AAGGAATCAACACTTCACCTCGTGCTTCGTCTCCGTGGGGGCATGCAGAT
ATTCGTCAAAACCCTAACGGGAAAGACGATTACCCTCGAGGTCGAGAGCT
CCGACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATT
CCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGATGG
AAGGACGCTCGCGGATTACAACATTCAGAAGGAATCAACTCTTCATCTGG
TGTTGCGTCTGAGGGGTGGCATGCAGATTTTTGTCAAGACATTGACCGGG
AAGACGATTACCCTGGAGGTGGAGAGTTCGGATACCATTGACAATGTCAA
GGCCAAGATTCAGGACAAGGAAGGGATCCCACCTGATCAGCAGAGCTCAT
CTTCGCTGGGAAGCAGCTTGAGGACGGCCGTACTCTTGCTGATTACAACA
TTCAGAAGGAGTCCACTCTTCATCTCGTCCTCCGTCTCCGT