DR908384

Overview
NameDR908384
Unique NameDR908384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908384 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 40/135 (29.63%), Postives = 74/135 (54.81%), Query Frame = 3
Query:    3 TALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD 404
            T+L+D Y K G +++A++IF++M+    + + +TY  +ISGL  +   E A++ F      G+  + + Y S+++    +G V E   +F EM+++G     +  Y  L+D L + G L+EAL   + +  E  D
Sbjct:  273 TSLVDMYVKCGCLDKALHIFQKME----KRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKND 403          
BLAST of DR908384 vs. ExPASy Swiss-Prot
Match: PP126_ARATH (Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana GN=At1g76280 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 56/214 (26.17%), Postives = 91/214 (42.52%), Query Frame = 3
Query:    9 LIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCK-NERLEEA--MQYFEFCRA----------NGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC----YNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGQVTRACKILDELA 599
            L+ +Y  L     A+ +  RMK   + PD  TY ++ S     N   EE   +   + C+           NG   + +   +++  LG  G V+E     ++        + Y     YN+++ +L +  + D  + +FKRM+  GC   V TY I+I+     H  + A  L  MMI  G +P A +F AL   L        A  +LD+ A
Sbjct:  409 LLAAYDSLDQPERAVRVLARMKELKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDMMRNGFQHSPISRLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEANETDMVINIFKRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVSMMIRDGFSPKAVTFTALMKILLNDANFEEALNLLDQAA 622          
BLAST of DR908384 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 46/191 (24.08%), Postives = 91/191 (47.64%), Query Frame = 3
Query:    3 TALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITP----------TAASFRALSIG 545
            T+L+  Y+  G +N+A  +F+ +    V    VT+  + SG   + R  EA+  F+     GV  ++ F   ++      G +D  E + + M E    ++S+    L++  AKCGK+++A ++F    D   ++ + T++ +I G       +E ++L+  M+ + + P          + AS  AL +G
Sbjct:  150 TSLLSIYSGSGRLNDAHKLFDEIPDRSV----VTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVF----DSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332          
BLAST of DR908384 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 45/190 (23.68%), Postives = 87/190 (45.79%), Query Frame = 3
Query:    6 ALIDSYAKLGSMNEAINI----------------FERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASF 527
            +LID Y+K G + EA  I                 E+M  + ++   V++  IISG    E+ E+A   F      G+  +   Y++++D           +++  ++++K    D Y  + L+D  +KCG L ++  +F    ++   +   T+  +I G     + EEA++L++ MI + I P   +F
Sbjct:  522 SLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMF----EKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 707          
The following BLAST results are available for this feature:
BLAST of DR908384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
PPR68_ARATH7.351e-1129.63Pentatricopeptide repeat-containing protein At1g31... [more]
PP126_ARATH7.351e-1126.17Pentatricopeptide repeat-containing protein At1g76... [more]
PP219_ARATH9.601e-1124.08Putative pentatricopeptide repeat-containing prote... [more]
PP207_ARATH9.601e-1123.68Pentatricopeptide repeat-containing protein At3g02... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16512 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-12_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908384 ID=DR908384; Name=DR908384; organism=Citrus sinensis; type=EST; length=651bp
ATACAGCTTTGATAGATTCCTATGCAAAACTTGGTAGCATGAATGAGGCA
ATAAATATCTTTGAGAGGATGAAATATGAGGGAGTTGAACCAGATGAGGT
TACTTATGGAGTTATTATAAGTGGTTTGTGTAAGAATGAGAGATTGGAGG
AGGCCATGCAGTATTTTGAGTTCTGTAGAGCTAATGGGGTGGCAGTTAAT
GCCATGTTTTATTCCAGTCTCATTGATGGCCTAGGGAAGGCTGGAAGAGT
TGATGAAGCTGAGGAACTTTTTGAGGAGATGGTTGAGAAGGGATGCCCGC
GTGACTCATATTGCTACAATGTCCTTATTGATGCCCTTGCTAAGTGCGGA
AAGCTTGATGAGGCTTTAGCACTTTTTAAGAGGATGGAAGATGAAGGATG
TGATCAAACAGTTTACACATACACAATACTCATCAATGGAATGTTCAAGG
AACACAGAAATGAGGAAGCATTAAAGCTGTGGGATATGATGATTGATAAG
GGTATCACACCAACTGCAGCTTCTTTTAGGGCTCTCTCAATTGGACTTTG
TCTGTCAGGCCAAGTAACACGCGCTTGTAAGATTTTGGATGAGCTGGCGC
CAAGGGCATAATTCCTGAGACAGCATTTGAAGATATGATCACTTGCTTGT
G
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