DR908382

Overview
NameDR908382
Unique NameDR908382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908382 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.393e-25
Identity = 46/115 (40.00%), Postives = 80/115 (69.57%), Query Frame = 1
Query:   76 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 420
            RR++++ +R+  +P  G+SASP  DN+  +N +I+GP+++P+E G F++ L   E YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  +L S+Q+LL+ PN   P
Sbjct:    7 RRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSP 121          
BLAST of DR908382 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.376e-25
Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   76 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHW 447
            +R+ KE   L+     GISA P  +N+  +   I GP  + Y G  ++L L  P  YP +AP V+FLT  +HPN+D  G ICLDILKDKWS    +RT+LLSIQ+LL  PN + PL+   A  W
Sbjct:   35 KRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMW 158          
BLAST of DR908382 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.376e-25
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 1
Query:   67 NLP----RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 504
            NLP    RR+ KE   L S+P  GI   P E+++    V I GP  +PY  G+F+++L L +D+P + PK  FLTKI+HPN+   G IC+++LK  W   L IR VLL+I+ LL  PNP+  L++   +    +  E    AK  T ++A
Sbjct:    7 NLPPHIIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTEIHA 156          
BLAST of DR908382 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.104e-25
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   67 NLP----RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 504
            NLP    RR+ KE   L S+P  GI   P E+++    V I GP  +PY GG+F+++L L +D+P + PK  FLTKI+HPN+   G IC+++LK  W   L IR VLL+I+ LL  PNP+  L++   +    +  E    A+  T ++A
Sbjct:    7 NLPPHIIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTDIHA 156          
BLAST of DR908382 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.053e-25
Identity = 59/150 (39.33%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   67 NLP----RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 504
            NLP    R++ KE   L S+P  GI   P E+++    V I GP  +PY GG+F+++L L +D+P + PK  FLTKI+HPN+   G IC+++LK  W   L IR VLL+I+ LL  PNP+  L++   +    +  E    A+  T ++A
Sbjct:    7 NLPPHIIRQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHA 156          
BLAST of DR908382 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.914e-25
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 1
Query:   46 GIPMASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWK 450
            G   A G++ +R+ +E   L+     GISA P  DN+  +   I G   + YE   +KL L  P  YP +AP V+F+T  +HPN+D  G ICLDILKDKWS    +RT+LLS+Q+LL  PN + PL+   A+ W+
Sbjct:   23 GTSAARGSVGKRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQ 157          
BLAST of DR908382 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.030e-25
Identity = 58/150 (38.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query:   67 NLP----RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 504
            NLP    R++ KE   L  +P  GI   P E+++    V I GP  +PY GG+F+++L L +D+P + PK  FLTKI+HPN+   G IC+++LK  W   L IR VLL+I+ LL  PNP+  L++   +    +  E    A+  T ++A
Sbjct:    7 NLPPHVIRQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHA 156          
BLAST of DR908382 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 59/153 (38.56%), Postives = 88/153 (57.52%), Query Frame = 1
Query:   67 NLPRRIV----KETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASDG 513
            NLP  I+    KE   L ++P  GI   P E+++    V I GP  +PY GG+F+++L L +D+P S PK  FLTKI+HPN+   G IC+++LK  W+  L IR VLL+I+ LL  PNP+  L++   +    +  E    A+  T ++   G
Sbjct:    7 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAG 159          
BLAST of DR908382 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 59/153 (38.56%), Postives = 86/153 (56.21%), Query Frame = 1
Query:   67 NLP----RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASDG 513
            NLP    R + KE   L ++P  GI   P+E+++   +  I GP  +PY GGVF++ L L +D+P   P+  FLTKI+HPN+   G IC+++LK  W   L +R VLL+I+ LL  PNP+  L++   K    D  E    A   T ++A  G
Sbjct:    7 NLPPQVLRLVYKEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTEIHAMGG 159          
BLAST of DR908382 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 59/153 (38.56%), Postives = 88/153 (57.52%), Query Frame = 1
Query:   67 NLPRRIV----KETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASDG 513
            NLP  I+    KE   L ++P  GI   P E+++    V I GP  +PY GG+F+++L L +D+P S PK  FLTKI+HPN+   G IC+++LK  W+  L IR VLL+I+ LL  PNP+  L++   +    +  E    A+  T ++   G
Sbjct:    7 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAG 159          
The following BLAST results are available for this feature:
BLAST of DR908382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBC2_YARLI1.393e-2540.00Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBE2C_DROME2.376e-2545.97Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UB2SC_XENLA2.376e-2540.00Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UB2SB_XENLA3.104e-2540.00Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2S_XENTR4.053e-2539.33Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBE2C_XENLA6.914e-2542.96Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2S_RANCA9.030e-2538.67Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBE2S_HUMAN1.540e-2438.56Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBE2S_DANRE1.540e-2438.56Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBE2S_BOVIN1.540e-2438.56Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16510 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908382 ID=DR908382; Name=DR908382; organism=Citrus sinensis; type=EST; length=652bp
GAAAAAAAGACGATCGATTTCTGACTCATCTCTGTAAAATCTCTTGGAAT
TCCGATGGCTAGTGGCAACCTCCCTCGCAGAATTGTCAAGGAAACCCAGC
GGCTGCTCAGTGAACCAGCTCCAGGCATTAGTGCTTCTCCTGCCGAAGAC
AACATGCGATATTTTAATGTAATGATTCTTGGTCCATCTCAGTCTCCTTA
TGAAGGTGGGGTTTTCAAGTTGGAGTTGTTTTTGCCTGAAGATTATCCAA
TGTCCGCTCCTAAGGTTCGATTTCTGACCAAAATATATCATCCTAACATA
GACAAGCTTGGAAGGATATGCCTTGATATTTTGAAAGATAAATGGAGTCC
CGCCCTGCAAATCCGCACAGTCCTGCTGAGTATCCAAGCTCTTTTGAGTG
CTCCGAACCCAGACGATCCACTTTCTGATAACATTGCAAAGCATTGGAAG
GCAGATGAGACTGAAGCTGTTGAAACTGCGAAGGAATGGACCCGGTTATA
TGCAAGTGATGGGTGAAGGCTAGAGCTTGTTCGAGGATATTTCTCTACAA
GTTTATGTTAAAAACACTAATTGATGTATGAACAGATGTGTAAAAATGTT
TCTCAATCGGTCTGTTATTTGAATGTTCCACTTGTATCATCATTAATTCA
AA
back to top