DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_BRUC2 (Peptide methionine sulfoxide reductase msrA OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=msrA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.037e-32
Identity = 73/161 (45.34%), Postives = 92/161 (57.14%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G  L  P   G +   FG GCFWG E  F +V GV  T VGY+ G  P+P Y   C+G T H EVV V +DP+V     LL++FW  HDPT   RQG D+GT YRS IY +N     +A +S +A  + L  +    + T+I  A  FY AE+YHQQYL K
Sbjct:   37 GHPLKGPWPDGMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQYLAK 197          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_BRUAB (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus GN=msrA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.037e-32
Identity = 73/161 (45.34%), Postives = 92/161 (57.14%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G  L  P   G +   FG GCFWG E  F +V GV  T VGY+ G  P+P Y   C+G T H EVV V +DP+V     LL++FW  HDPT   RQG D+GT YRS IY +N     +A +S +A  + L  +    + T+I  A  FY AE+YHQQYL K
Sbjct:   37 GHPLKGPWPDGMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQYLAK 197          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_BRUA2 (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus (strain 2308) GN=msrA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.037e-32
Identity = 73/161 (45.34%), Postives = 92/161 (57.14%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G  L  P   G +   FG GCFWG E  F +V GV  T VGY+ G  P+P Y   C+G T H EVV V +DP+V     LL++FW  HDPT   RQG D+GT YRS IY +N     +A +S +A  + L  +    + T+I  A  FY AE+YHQQYL K
Sbjct:   37 GHPLKGPWPDGMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQYLAK 197          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_BRUA1 (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus (strain S19) GN=msrA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.037e-32
Identity = 73/161 (45.34%), Postives = 92/161 (57.14%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G  L  P   G +   FG GCFWG E  F +V GV  T VGY+ G  P+P Y   C+G T H EVV V +DP+V     LL++FW  HDPT   RQG D+GT YRS IY +N     +A +S +A  + L  +    + T+I  A  FY AE+YHQQYL K
Sbjct:   37 GHPLKGPWPDGMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQYLAK 197          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBH (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=msrA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.660e-32
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRK-IVTEILPAKRFYRAEEYHQQYLEKGGG 583
            GCFWGVE    R+ G+ +T+VGY+ G   +P+Y  VCSG T H E   +++D  +     LL+ FW   DPT LN+QG D GTQYR+GI+Y +E    +    +++K  E K+ RK IVTE+ P K FY AEEYHQ+YL+K  G
Sbjct:    9 GCFWGVEEYMSRIEGIVETKVGYANGIKENPSYEEVCSGVTGHAEACYIKYDESIISLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFYLDEKDLNVI---IKSKYQEQKNYRKPIVTEVEPLKCFYEAEEYHQKYLKKNPG 149          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_CLOB1 (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=msrA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.660e-32
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRK-IVTEILPAKRFYRAEEYHQQYLEKGGG 583
            GCFWGVE    R+ G+ +T+VGY+ G   +P+Y  VCSG T H E   +++D  +     LL+ FW   DPT LN+QG D GTQYR+GI+Y +E    +    +++K  E K+ RK IVTE+ P K FY AEEYHQ+YL+K  G
Sbjct:    9 GCFWGVEEYMSRIEGIVETKVGYANGIKENPSYEEVCSGVTGHAEACYIKYDESIISLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFYLDEKDLNVI---IKSKYQEQKNYRKPIVTEVEPLKCFYEAEEYHQKYLKKNPG 149          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ALKMQ (Peptide methionine sulfoxide reductase msrA OS=Alkaliphilus metalliredigens (strain QYMF) GN=msrA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.474e-32
Identity = 71/143 (49.65%), Postives = 90/143 (62.94%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGG 583
            GCFWGVE   +R+ GV +T+VGY+ G+V +P+Y  VCS  T H EV  ++FD        LL+ FW   DPT  NRQG D+G+QYR+GIYY +E       +S E +Q   K    IVTEI P K FY AEEYHQ+YL+K  G
Sbjct:    9 GCFWGVEAYMERIDGVVETKVGYANGHVENPSYEEVCSSQTGHAEVCYIKFDETKISLEILLNGFWKIIDPTVENRQGPDIGSQYRTGIYYGHEEDLDTIIKSKEMQQ--KKYDANIVTEIEPLKAFYDAEEYHQKYLKKNPG 149          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_PSEAE (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa GN=msrA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.537e-32
Identity = 76/161 (47.20%), Postives = 89/161 (55.28%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEM--KDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G  L  P   G +   FG GCFWG E    +  GV  T VGY+ G  P+P Y  VCSG T H EVV V ++PQ   +  LL VFW  HDPT   RQG D+GTQYRS IY ++  Q   A  S E+ Q E+      +I TEI     FY AE YHQQYL K
Sbjct:   38 GRPLTAPFPAGLQQVLFGMGCFWGAERRLWQQPGVWVTAVGYAGGYTPNPTYDEVCSGLTGHSEVVLVVYNPQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAAMASRESFQAELAKAGYDRITTEIADVPPFYYAEAYHQQYLAK 198          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_OCHAN (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi GN=msrA PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.537e-32
Identity = 73/158 (46.20%), Postives = 92/158 (58.23%), Query Frame = 2
Query:  107 LDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            L  P   G++   FG GCFWG E  F +V GV  T VGY+ G  P+P Y   C+G T H EVV V +DP+V     LL++FW  HDPT   RQG D+GT YRS IY +++    +A +S EA  + L  +    I TEI  A   Y AE+YHQQYL K
Sbjct:   40 LKEPWPEGYKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGVTPNPTYEETCTGLTGHAEVVLVVYDPKVVSLDELLTLFWEEHDPTQGMRQGNDIGTTYRSVIYTFDKADRDVAEKSREAYSQALAGRGLGPITTEIEDAPELYYAEDYHQQYLAK 197          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_METNO (Peptide methionine sulfoxide reductase msrA OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.537e-32
Identity = 77/162 (47.53%), Postives = 90/162 (55.56%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVV-GVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G  L  P   G E A FG GCFWG E  F ++  G+  T VGY+ G  P+P Y  VC+G T H EVV V +DP   P+  LL  FW  HDPT   RQG DVGTQYRSG+Y  +  +   A  S +A  + L  K    I TEI     FY AE YHQQYL K
Sbjct:   34 GRPLKGPYPEGIETALFGLGCFWGAERKFWQLGDGIWVTAVGYAAGTTPNPTYEEVCTGLTGHNEVVLVAYDPAAMPFERLLKTFWESHDPTQGMRQGNDVGTQYRSGLYVADAERRAQAEASRDAYGEALRAKGYGPITTEIRDPGPFYFAEAYHQQYLAK 195          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_BRUC22.037e-3245.34Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUAB2.037e-3245.34Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUA22.037e-3245.34Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUA12.037e-3245.34Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_CLOBH2.660e-3247.22Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_CLOB12.660e-3247.22Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_ALKMQ3.474e-3249.65Peptide methionine sulfoxide reductase msrA OS=Alk... [more]
MSRA_PSEAE4.537e-3247.20Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_OCHAN4.537e-3246.20Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_METNO4.537e-3247.53Peptide methionine sulfoxide reductase msrA OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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