DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_METHJ (Peptide methionine sulfoxide reductase msrA OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.537e-32
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGR 586
            A F  GCFWG+E  FQ+V GV  T+VGY  G+  +P Y+ VCS TT H E + +++D     Y  LL +F+  H+PT +NRQG DVG+QYRS I+Y +  Q   A   +       +    I TE++PA+ F+ AEEYHQ Y  K G R
Sbjct:    4 AFFAGGCFWGIEAGFQKVPGVINTKVGYMGGHTIEPTYQEVCSDTTGHAETIALEYDDTAITYRKLLEIFFSLHNPTEVNRQGPDVGSQYRSVIFYTSPEQKEEAEMFIAEMNQSGRYHAAIATEVVPAETFWPAEEYHQSYFLKIGQR 152          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_XYLFT (Peptide methionine sulfoxide reductase msrA OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.926e-32
Identity = 77/153 (50.33%), Postives = 85/153 (55.56%), Query Frame = 2
Query:  125 PGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEIL-PAKRFYRAEEYHQQYLEK 574
            PG    QFG GCFWG E  F ++ GV  T  GY+ G VP P YR VCSG T H EVV V +D  V  +  LL  FW  HDPT   RQG D+GTQYRS I+     Q   A  S E   +QL       I TEIL PA  FY AE  HQQYL K
Sbjct:   43 PGLALIQFGLGCFWGAERLFWQLPGVFSTAAGYAGGGVPYPTYREVCSGETGHAEVVLVVYDHTVISFEQLLQTFWESHDPTQGMRQGNDIGTQYRSVIHCTTSEQYAAASASREVYQQQLNTAGYTAITTEILHPAPPFYYAENEHQQYLAK 195          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_XYLF2 (Peptide methionine sulfoxide reductase msrA OS=Xylella fastidiosa (strain M23) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.926e-32
Identity = 77/153 (50.33%), Postives = 85/153 (55.56%), Query Frame = 2
Query:  125 PGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEIL-PAKRFYRAEEYHQQYLEK 574
            PG    QFG GCFWG E  F ++ GV  T  GY+ G VP P YR VCSG T H EVV V +D  V  +  LL  FW  HDPT   RQG D+GTQYRS I+     Q   A  S E   +QL       I TEIL PA  FY AE  HQQYL K
Sbjct:   43 PGLALIQFGLGCFWGAERLFWQLPGVFSTAAGYAGGGVPYPTYREVCSGETGHAEVVLVVYDHTVISFEQLLQTFWESHDPTQGMRQGNDIGTQYRSVIHCTTSEQYAAASASREVYQQQLNTAGYTAITTEILHPAPPFYYAENEHQQYLAK 195          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_PSEA8 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa (strain LESB58) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.926e-32
Identity = 76/161 (47.20%), Postives = 89/161 (55.28%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEM--KDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G  L  P   G +   FG GCFWG E    +  GV  T VGY+ G  P+P Y  VCSG T H EVV V ++PQ   +  LL VFW  HDPT   RQG D+GTQYRS IY ++  Q   A  S E+ Q E+      +I TEI     FY AE YHQQYL K
Sbjct:   38 GRPLTAPFPAGLQQVLFGMGCFWGAERRLWQQPGVWVTAVGYAGGYTPNPTYDEVCSGLTGHSEVVLVVYNPQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAALASRESFQAELAKAGYDRITTEIADVPPFYYAEAYHQQYLAK 198          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_METS4 (Peptide methionine sulfoxide reductase msrA OS=Methylobacterium sp. (strain 4-46) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.926e-32
Identity = 78/162 (48.15%), Postives = 91/162 (56.17%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVV-GVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME--AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G  L  P   G E A FG GCFWG E  F ++  G+  T VGY+ G  P+P Y  VC+G T H EVV V +DP V P+  LL  FW  HDPT   RQG DVGTQYRSG+Y  +  +   A  S +  A+ L  K    I TEI     FY AE YHQQYL K
Sbjct:   34 GRALKGPYPEGIETALFGLGCFWGAERKFWQLGDGIWVTAVGYAAGTTPNPTYEEVCTGLTGHNEVVLVAYDPAVLPFGQLLRTFWESHDPTQGMRQGNDVGTQYRSGLYVSDPERRAEAEASRDAYAQALRAKGFGSITTEIRDPGPFYFAEAYHQQYLAK 195          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_PHOPR (Peptide methionine sulfoxide reductase msrA OS=Photobacterium profundum GN=msrA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.740e-32
Identity = 69/145 (47.59%), Postives = 87/145 (60.00%), Query Frame = 2
Query:  149 GAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQR---KIVTEILPAKRFYRAEEYHQQYLEK 574
            G GCFWG E  F  + G+  T VGYS G  P+P Y  VCSG T H EVVR+ +DP +     +L++FW  H+PT   +QG D+GTQYRS IY     Q   A+ S +  Q  ++ Q+    I TEI PA  FY AE+YHQQYL K
Sbjct:   49 GMGCFWGAERLFWNLPGIYSTAVGYSGGFTPNPTYEEVCSGKTGHSEVVRIIYDPLIISLEQILTLFWESHNPTQGMQQGNDIGTQYRSVIYTTTPNQLTYAQHSKQCYQQSLEQQQLESPITTEIEPAGTFYFAEDYHQQYLVK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_BOVIN (Peptide methionine sulfoxide reductase OS=Bos taurus GN=MSRA PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.740e-32
Identity = 72/155 (46.45%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  116 PDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ--RKIVTEILPAKRFYRAEEYHQQYLEK 574
            P   G + A FG GCFWG E  F  + GV  T+VG++ G  P+P Y+ VCSG T H EVVRV F P+   +  LL VFW  HDPT   RQG D G+QYRS IY  +      A +S E  Q  + +     I T+I   + FY AE+YHQQYL K
Sbjct:   58 PFPEGTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSK 212          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_PSEAB (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=msrA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 76/161 (47.20%), Postives = 88/161 (54.66%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEM--KDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G  L  P   G +   FG GCFWG E    +  GV  T VGY+ G  P+P Y  VCSG T H EVV V ++PQ   +  LL VFW  HDPT   RQG D+GTQYRS IY ++  Q   A  S E  Q E+      +I TEI     FY AE YHQQYL K
Sbjct:   38 GRPLTAPFPAGLQQVLFGMGCFWGAERRLWQQPGVWVTAVGYAGGYTPNPTYDEVCSGLTGHSEVVLVVYNPQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAAMASRENFQAELAKAGYDRITTEIADVPPFYYAEAYHQQYLAK 198          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_PSEPW (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas putida (strain W619) GN=msrA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.320e-31
Identity = 75/149 (50.34%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK--DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            +FA FG GCFWG E  F +  GV  T VGY+ G  P+P Y  VCSG T H EVV V FD     Y  LL++FW  H+PT   RQG DVGTQYRS IY  +  Q   A+ S +A Q E+      +I TEI  A   Y AE YHQQYL K
Sbjct:   52 DFAIFGLGCFWGAERRFWQREGVVSTVVGYAGGFTPNPTYEEVCSGLTGHTEVVLVVFDKDKVSYRELLAMFWELHNPTQGMRQGNDVGTQYRSAIYCTSPQQLEEAKASRDAFQAELNKAGYGEITTEIDQAPTVYFAEAYHQQYLAK 200          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_PSESM (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. tomato GN=msrA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.724e-31
Identity = 77/165 (46.67%), Postives = 90/165 (54.55%), Query Frame = 2
Query:   86 NPAVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ--RKIVTEILPAKRFYRAEEYHQQYLEK 574
            NP +GP          EFA FG GCFWG E    +  GV  T  GY+ G  P+P Y  VCSG T H EVV V ++P+   Y +LL VFW  H+PT   RQG D+GTQYRS IY     Q   A+ S +A Q E+       I TEI  A   Y AE YHQQYL K
Sbjct:   39 NPLLGPFTSNV-----EFAIFGLGCFWGAERRLWQQEGVVSTVAGYAGGFTPNPTYEEVCSGLTGHTEVVLVVYEPEKISYDSLLKVFWEAHNPTQGMRQGNDIGTQYRSVIYCTTPEQLAAAKASADAFQAELSKAGLGGITTEIEEAPTVYFAETYHQQYLAK 198          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_METHJ4.537e-3244.30Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_XYLFT5.926e-3250.33Peptide methionine sulfoxide reductase msrA OS=Xyl... [more]
MSRA_XYLF25.926e-3250.33Peptide methionine sulfoxide reductase msrA OS=Xyl... [more]
MSRA_PSEA85.926e-3247.20Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_METS45.926e-3248.15Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_PHOPR7.740e-3247.59Peptide methionine sulfoxide reductase msrA OS=Pho... [more]
MSRA_BOVIN7.740e-3246.45Peptide methionine sulfoxide reductase OS=Bos taur... [more]
MSRA_PSEAB1.011e-3147.20Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PSEPW1.320e-3150.34Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PSESM1.724e-3146.67Peptide methionine sulfoxide reductase msrA OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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