DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_XYLFA (Peptide methionine sulfoxide reductase msrA OS=Xylella fastidiosa GN=msrA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.017e-31
Identity = 75/147 (51.02%), Postives = 83/147 (56.46%), Query Frame = 2
Query:  143 QFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEIL-PAKRFYRAEEYHQQYLEK 574
            QFG GCFWG E  F ++ GV  T  GY+ G VP P YR VCSG T H EVV V +D  V  +  LL  FW  HDPT   RQG D+GTQYRS I+     Q   A  S E   +QL       I TEIL PA  FY AE  HQQYL K
Sbjct:   49 QFGLGCFWGAERLFWQLPGVFSTAAGYAGGGVPYPTYREVCSGETGHAEVVLVVYDHTVISFEQLLQTFWESHDPTQGMRQGNDIGTQYRSVIHCTTSKQYAAASTSREVYQQQLNTAGYTAITTEILHPAPPFYYAENEHQQYLAK 195          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_PSEU2 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.017e-31
Identity = 77/165 (46.67%), Postives = 89/165 (53.94%), Query Frame = 2
Query:   86 NPAVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRK--IVTEILPAKRFYRAEEYHQQYLEK 574
            NP +GP      +   EFA FG GCFWG E    +  GV  T  GY+ G  P+P Y  VCSG T H EVV V ++P    Y  LL VFW  H+PT   RQG D+GTQYRS IY     Q   A+ S E  Q ++    K  I TEI  A   Y AE YHQQYL K
Sbjct:   39 NPLLGPF-----SSNVEFAIFGMGCFWGAERRLWQQEGVVSTVAGYAGGFTPNPTYEEVCSGLTGHTEVVLVVYEPAKISYEELLKVFWEVHNPTQGMRQGNDIGTQYRSVIYCTTPEQLDAAKASAETFQAQLNKAGKGTITTEIEQAPTVYFAEAYHQQYLAK 198          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_PSE14 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.017e-31
Identity = 77/165 (46.67%), Postives = 91/165 (55.15%), Query Frame = 2
Query:   86 NPAVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ--RKIVTEILPAKRFYRAEEYHQQYLEK 574
            NP +GP      +   EFA FG GCFWG E    +  GV  T VGY+ G  P+P Y  VCSG T H EVV V ++P+   Y +LL VFW  H+PT   RQG D+GTQYRS IY     Q   A+ S    Q E++      I TEI  A   Y AE YHQQYL K
Sbjct:   39 NPLLGPF-----SSNVEFAIFGLGCFWGAERRLWQQEGVVSTVVGYAGGFTPNPTYEEVCSGLTAHTEVVLVVYEPEKISYKSLLKVFWEAHNPTQGMRQGNDIGTQYRSVIYCTTPKQLDAAKASAAEFQAELRKAGLGAITTEIEEAPTVYFAEAYHQQYLAK 198          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_NITSB (Peptide methionine sulfoxide reductase msrA OS=Nitratiruptor sp. (strain SB155-2) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.552e-31
Identity = 69/144 (47.92%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQY 565
            E A  G GCFW +E  FQRV GV +   GY+     +P Y  VC+GTT   EVV++ FDP +  Y  LL +F+  HDPT LNRQGAD+GTQYRS I+  NE Q  +A++ ++  +L    + KIVT I     FY AE YHQ Y
Sbjct:    3 ESAIVGGGCFWCLEAIFQRVKGVHRVTSGYAGCRRQNPTYEQVCTGTTKCAEVVKIDFDPHIINYEELLHIFFAVHDPTQLNRQGADIGTQYRSVIFPLNEEQKAIAQKVIQ--KLNPYFENKIVTTIENPGTFYEAESYHQNY 144          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_XANCH (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. phaseoli GN=msrA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.557e-31
Identity = 74/147 (50.34%), Postives = 81/147 (55.10%), Query Frame = 2
Query:  143 QFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQ--ARLARESMEAKQLEMKDQRKIVTEI-LPAKRFYRAEEYHQQYLEK 574
            QFG GCFWG E  F  V GV  T VGY+ G  P+  Y  VCSG T H E V V FD Q   +  LL  FW  HDPT   +QG DVGTQYRS IY   + Q  A LA      +QL       I TEI  PA  FY AE+ HQQYL K
Sbjct:   49 QFGLGCFWGAERKFWNVPGVYTTAVGYAGGQTPNATYSEVCSGQTGHTEAVLVVFDEQAVSFAQLLRTFWESHDPTQGMQQGNDVGTQYRSAIYCTTQAQYDAALASRDAYQQQLTASGYGDITTEIRFPAPTFYYAEDDHQQYLAK 195          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_XANC8 (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=msrA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.557e-31
Identity = 73/147 (49.66%), Postives = 83/147 (56.46%), Query Frame = 2
Query:  143 QFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQ--ARLARESMEAKQLEMKDQRKIVTEIL-PAKRFYRAEEYHQQYLEK 574
            QFG GCFWG E  F  V GV  T VGY+ G  P+  Y  VCSG T H E V V +D Q   +  LL  FW  HDPT   +QG+DVGTQYRS IY   + Q  A +A      +QL       I TEIL PA  FY AE+ HQQYL K
Sbjct:   49 QFGLGCFWGAERKFWNVPGVYTTAVGYAGGKTPNATYSEVCSGQTGHTEAVLVVYDAQAVSFEQLLRTFWESHDPTQGMQQGSDVGTQYRSAIYCSTQAQYDAAIASRDAYQQQLTAAGYGDITTEILYPAPTFYYAEDDHQQYLAK 195          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_XANC5 (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=msrA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 74/147 (50.34%), Postives = 81/147 (55.10%), Query Frame = 2
Query:  143 QFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQ--ARLARESMEAKQLEMKDQRKIVTEI-LPAKRFYRAEEYHQQYLEK 574
            QFG GCFWG E  F  V GV  T VGY+ G  P+  Y  VCSG T H E V V FD Q   +  LL  FW  HDPT   +QG DVGTQYRS IY   + Q  A LA      +QL       I TEI  PA  FY AE+ HQQYL K
Sbjct:   49 QFGLGCFWGAERKFWNVPGVYTTAVGYAGGQTPNATYSEVCSGQTGHTEAVLVVFDEQAVSFAQLLRTFWESHDPTQGMQQGNDVGTQYRSAIYCTTQAQYDAALASRDAYQQQLTAAGYGAITTEIRFPAPTFYYAEDDHQQYLAK 195          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_MOUSE (Peptide methionine sulfoxide reductase OS=Mus musculus GN=Msra PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 71/155 (45.81%), Postives = 88/155 (56.77%), Query Frame = 2
Query:  116 PDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME--AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            P   G + A FG GCFWG E  F  + GV  T+VG++ G+  +P Y+ VCS  T H EVVRV + P+   +  LL VFW  HDPT   RQG D GTQYRS +Y  +  Q   A  S E   K L   +   I T+I   + FY AE+YHQQYL K
Sbjct:   58 PFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRPEHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSKHNFGPITTDIREGQVFYYAEDYHQQYLSK 212          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_METCA (Peptide methionine sulfoxide reductase msrA OS=Methylococcus capsulatus GN=msrA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 76/155 (49.03%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  113 RPDNP-GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEILPAKRFYRAEEYHQQYL 568
            RP  P G   A FG GCFWG E  F  + GV  T VGY+ G+ P+P Y  VC+G T H EVV V ++P    +  LL VFW  HDPT   RQG DVGTQYRS I+     Q + A  S +A  + LE   +  I TEI  A  FY AE YHQQYL
Sbjct:   38 RPPFPSGTARAFFGMGCFWGAERRFWTLPGVYSTAVGYAGGSTPNPTYDEVCTGRTGHAEVVLVVYEPDKVGFDALLQVFWTSHDPTQGMRQGNDVGTQYRSVIFATTPEQLQWALVSRDAYERALERAGRGGITTEIRMAPDFYYAESYHQQYL 192          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_HUMAN (Peptide methionine sulfoxide reductase OS=Homo sapiens GN=MSRA PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.460e-30
Identity = 71/155 (45.81%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  116 PDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ--RKIVTEILPAKRFYRAEEYHQQYLEK 574
            P   G + A FG GCFWG E  F  + GV  T+VG++ G   +P Y+ VCS  T H EVVRV + P+   +  LL VFW  HDPT   RQG D GTQYRS IY  +  Q   A  S E  Q  + +     I T+I   + FY AE+YHQQYL K
Sbjct:   60 PFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSK 214          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_XYLFA5.017e-3151.02Peptide methionine sulfoxide reductase msrA OS=Xyl... [more]
MSRA_PSEU25.017e-3146.67Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PSE145.017e-3146.67Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_NITSB6.552e-3147.92Peptide methionine sulfoxide reductase msrA OS=Nit... [more]
MSRA_XANCH8.557e-3150.34Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_XANC88.557e-3149.66Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_XANC51.118e-3050.34Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_MOUSE1.118e-3045.81Peptide methionine sulfoxide reductase OS=Mus musc... [more]
MSRA_METCA1.118e-3049.03Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_HUMAN1.460e-3045.81Peptide methionine sulfoxide reductase OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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