DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBC (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain ACICU) GN=msrA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.610e-37
Identity = 76/150 (50.67%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRG 589
            A FG GCFW VE  F ++ GV K   GY+ G+   P Y  VC G T H EVV + FD Q   Y+ LL VF+  HDPTTLNRQG D+GTQYRS IYY+NE Q + A  +++  +    D   IVTE+ PA  FY AE+YHQ Y EK   +G
Sbjct:    4 ALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQTLK---DDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQG 150          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ACIB5 (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AB0057) GN=msrA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.610e-37
Identity = 76/150 (50.67%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRG 589
            A FG GCFW VE  F ++ GV K   GY+ G+   P Y  VC G T H EVV + FD Q   Y+ LL VF+  HDPTTLNRQG D+GTQYRS IYY+NE Q + A  +++  +    D   IVTE+ PA  FY AE+YHQ Y EK   +G
Sbjct:    4 ALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQTLK---DDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQG 150          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ACIB3 (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AB307-0294) GN=msrA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.610e-37
Identity = 76/150 (50.67%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRG 589
            A FG GCFW VE  F ++ GV K   GY+ G+   P Y  VC G T H EVV + FD Q   Y+ LL VF+  HDPTTLNRQG D+GTQYRS IYY+NE Q + A  +++  +    D   IVTE+ PA  FY AE+YHQ Y EK   +G
Sbjct:    4 ALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQTLK---DDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQG 150          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_CYAP8 (Peptide methionine sulfoxide reductase msrA OS=Cyanothece sp. (strain PCC 8801) GN=msrA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.103e-37
Identity = 83/161 (51.55%), Postives = 94/161 (58.39%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G  L  P   G E A FG GCFWG E  F +  GV  T VGY+ G  P+P Y+ VC+G T H EVV V FDP++  Y  LL VFW  H+PT   RQG DVGTQYRSGIY Y+    + A  S E   K L       I TEIL A  FY AE+YHQQYL K
Sbjct:   36 GHPLKPPFPSGLETAMFGLGCFWGAERKFWQCEGVYTTAVGYAAGITPNPTYQEVCTGLTGHNEVVLVVFDPKIISYEELLKVFWESHNPTQGMRQGNDVGTQYRSGIYVYSPQHKKAAETSKEVYQKALNQAGYGDITTEILDAPEFYYAEDYHQQYLAK 196          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ACIC5 (Peptide methionine sulfoxide reductase msrA OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=msrA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.103e-37
Identity = 73/147 (49.66%), Postives = 97/147 (65.99%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGG 580
            A FGAGCFWGVE +F+++ GV     GY  G + +P YR VC+  T H EVV + F+P    +  LL  F+G HDPT LNRQG D GTQYRS I+Y++  Q  +A+  ++    E +  R IVT+++PA  F+RAEEYHQ+YLEK G
Sbjct:    4 ATFGAGCFWGVEASFRQLHGVQDVAAGYEGGKLDNPTYRDVCTDLTGHAEVVEIDFNPDEIRFEQLLEAFFGLHDPTQLNRQGPDWGTQYRSVIFYHSPEQQTVAQAFIDRLTAEKRFPRPIVTQVVPAATFWRAEEYHQRYLEKRG 150          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_VIBVU (Peptide methionine sulfoxide reductase msrA OS=Vibrio vulnificus GN=msrA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.746e-37
Identity = 81/161 (50.31%), Postives = 98/161 (60.87%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQR--KIVTEILPAKRFYRAEEYHQQYLEK 574
            G D+      G +   FG GCFWG E  F ++ GV  T VGYS G   +P Y+ VCSG T H EVVRV FDPQV P   LL  FW RHDPT   RQG D+GTQYRS IY +++ Q  +A  S +A Q  + +Q+   I TEI PA  ++ AE YHQQYL K
Sbjct:   31 GSDITASATQGQQEILFGMGCFWGAERLFWQLDGVVSTSVGYSGGFTLNPTYQEVCSGQTGHTEVVRVIFDPQVLPLEQLLEKFWERHDPTQGMRQGNDLGTQYRSAIYTFSDQQLDIALASQQAYQAALANQQHNTITTEIRPAGPYFYAETYHQQYLAK 191          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_DEIRA (Peptide methionine sulfoxide reductase msrA OS=Deinococcus radiodurans GN=msrA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.746e-37
Identity = 78/152 (51.32%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRG 589
            E A F  GCFW  E   Q + GV K E GY  G VP+P+YR VC G T H E VRV FDP    Y +LL +F+  HDPT+LNRQGADVGTQYRS ++   + Q + ARE +E    E    R IVT I PA  FY AE+YHQ Y +   G+G
Sbjct:   33 EQAIFAGGCFWCTEAVMQDLRGVQKVESGYIGGTVPNPDYRSVCGGQTGHAEAVRVTFDPNQISYRDLLGLFFATHDPTSLNRQGADVGTQYRSALFPLTQEQEQTAREMIEQLGTEDVFGRPIVTSIEPASTFYVAEDYHQNYYKNNPGQG 184          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_RHOCS (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=msrA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.587e-37
Identity = 87/182 (47.80%), Postives = 101/182 (55.49%), Query Frame = 2
Query:   35 AVAGIGEMAGTGDNNTTNPAVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME--AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            A+ G  E    G+ +  N   G  L  P   G E A FG GCFWGVE  F +V GV  T  GY+ G  P+P Y  VC+G T H EVV V +DP    Y  LL VFW  HDPT   RQG DVGTQYRS IY     Q RLA  S +  A +L+ +    + TEI  A  FY AE+YHQQYL K
Sbjct:   17 ALPGRAEPLPVGNIHAVN---GHPLKPPFPAGLETAVFGMGCFWGVERKFWQVPGVYSTAAGYAGGPTPNPTYEEVCTGRTGHAEVVLVVYDPATVSYAELLKVFWENHDPTQGMRQGNDVGTQYRSAIYATTPEQLRLAEASRDSYASRLKAQGYGAVTTEIREAPAFYYAEDYHQQYLHK 195          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBT (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=msrA PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.685e-37
Identity = 75/150 (50.00%), Postives = 92/150 (61.33%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRG 589
            A FG GCFW VE  F ++ GV K   GY+ G+   P Y  VC G T H EVV + FD Q   Y+ LL VF+  HDPTTLNRQG D+GTQYRS IYY+NE Q + A  +++  +    D   IVTE+ P   FY AE+YHQ Y EK   +G
Sbjct:    4 ALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQTLK---DDDLDIVTELSPTPTFYPAEDYHQNYYEKNPSQG 150          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ENTS8 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.118e-37
Identity = 81/152 (53.29%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F  + GV  T  GY+ G  P+P YR VCSG T H E VRV +DP V  Y  LL VFW  HDP    RQG DVGTQYRS IY     Q   A+ S+E  +  M+   D R I TEI PAK FY AE+ HQQYL K
Sbjct:   42 GMEVALFAMGCFWGVERLFWALPGVYSTAAGYTGGYTPNPTYREVCSGQTGHAEAVRVVYDPNVISYEQLLQVFWENHDPAQGMRQGNDVGTQYRSAIYPLTPEQEAAAQASLERFRAAMEAAGDYRHITTEIAPAKPFYYAEDEHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_ACIBC1.610e-3750.67Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIB51.610e-3750.67Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIB31.610e-3750.67Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_CYAP82.103e-3751.55Peptide methionine sulfoxide reductase msrA OS=Cya... [more]
MSRA_ACIC52.103e-3749.66Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_VIBVU2.746e-3750.31Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_DEIRA2.746e-3751.32Peptide methionine sulfoxide reductase msrA OS=Dei... [more]
MSRA_RHOCS3.587e-3747.80Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_ACIBT4.685e-3750.00Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ENTS86.118e-3753.29Peptide methionine sulfoxide reductase msrA OS=Ent... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
back to top