DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_CORML (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium melassecola GN=msrA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.192e-28
Identity = 69/172 (40.12%), Postives = 94/172 (54.65%), Query Frame = 2
Query:   71 DNNTTNPAVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEI--LPAKRFYRAEEYHQQYLEK 574
            +N   +  +G  +  P   G +    G GCFWGVE  + ++ GV  T VGY+ G  P+P YR VCSG T H E+V V +DP       L++     HDPT   RQG DVGTQYRS  Y  NE  A   +  ++A  + L+     +I TEI  +    ++ AE+YHQQYL+K
Sbjct:   27 ENPAPHTVLGTPVTGPWKEGQQRIWIGLGCFWGVEQMYWQMDGVEGTSVGYAGGFTPNPTYREVCSGRTGHTEIVEVVYDPSKISLEQLVARGLEAHDPTQGFRQGNDVGTQYRSAYYTENEEGAARVKAVVDAYGETLKQHGFGEITTEIGVISPSEYFLAEDYHQQYLDK 198          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_CORGL (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium glutamicum GN=msrA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.192e-28
Identity = 69/172 (40.12%), Postives = 94/172 (54.65%), Query Frame = 2
Query:   71 DNNTTNPAVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEI--LPAKRFYRAEEYHQQYLEK 574
            +N   +  +G  +  P   G +    G GCFWGVE  + ++ GV  T VGY+ G  P+P YR VCSG T H E+V V +DP       L++     HDPT   RQG DVGTQYRS  Y  NE  A   +  ++A  + L+     +I TEI  +    ++ AE+YHQQYL+K
Sbjct:   27 ENPAPHTVLGTPVTGPWKEGQQRIWIGLGCFWGVEQMYWQMDGVEGTSVGYAGGFTPNPTYREVCSGRTGHTEIVEVVYDPSKISLEQLVARGLEAHDPTQGFRQGNDVGTQYRSAYYTENEEDAARVKAVVDAYGETLKQHGFGEITTEIGVISPSDYFLAEDYHQQYLDK 198          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA2_RHILO (Peptide methionine sulfoxide reductase msrA 2 OS=Rhizobium loti GN=msrA2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.192e-28
Identity = 68/155 (43.87%), Postives = 85/155 (54.84%), Query Frame = 2
Query:  107 LDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWG-RHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYL 568
            +D    PG E A F  GCFWGV+  FQ V GVSK   GY+ G   D  Y  V +G T H E V + +DP    Y  LL V++   H+PT LN QG D GTQYRS I+  N+TQ ++A+  ++           IVT I   K FY AE YHQ +L
Sbjct:    1 MDEKAAPGSETAIFAGGCFWGVQGVFQHVKGVSKAVSGYTGGAKDDAVYETVGTGRTGHAESVEITYDPSKVTYGQLLQVYFSVAHNPTQLNFQGPDSGTQYRSTIFAENDTQKQIAQSYIDQLDKAKLYPAPIVTTIETGKTFYPAENYHQDFL 155          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ARTS2 (Peptide methionine sulfoxide reductase msrA OS=Arthrobacter sp. (strain FB24) GN=msrA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 64/147 (43.54%), Postives = 86/147 (58.50%), Query Frame = 2
Query:  149 GAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRG 589
            G GCFW ++  +Q+  GV+    GY+ G+   P+Y  VCSGTT H EVV V F+  V P   +L +F+  HDPTTLNRQG DVGTQYRS ++Y    +  L  E++E  Q        IVTE+     F+ AE++HQ Y  K   +G
Sbjct:    7 GGGCFWCLDAVYQKTKGVTSVISGYTGGHDRHPDYYSVCSGTTGHAEVVAVSFEEDVIPAEVILDMFFALHDPTTLNRQGYDVGTQYRSSMFYETTEEKILFEEAIERNQALW--AHPIVTEVSRLPVFHVAEDFHQDYYAKHPEQG 151          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_STRA3 (Peptide methionine sulfoxide reductase msrA OS=Streptococcus agalactiae serotype III GN=msrA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.855e-28
Identity = 62/159 (38.99%), Postives = 88/159 (55.35%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEK 610
            E A F  GCFW +   F+ + G+     GY+ G+V +P Y+ VCS TT H E V + F+P+   Y NL+ ++W + DPT    Q  D G  YR  I+Y NE Q ++A++S +  Q   +  R IVT I PA  FY AE+YHQ +      R +  SA +
Sbjct:    2 ERAIFAGGCFWCMVQPFEELDGIESVLSGYTGGHVENPTYKEVCSKTTGHTEAVEIIFNPEKISYANLVELYWAQTDPTDAFGQFEDRGDNYRPVIFYENEEQRQIAQKSKDKLQASGRFDRPIVTSIEPADTFYPAEDYHQAFYRTNPARYALSSARR 160          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_COREF (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium efficiens GN=msrA PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 8.855e-28
Identity = 67/164 (40.85%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   95 VGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARE--SMEAKQLEMKDQRKIVTE--ILPAKRFYRAEEYHQQYLEK 574
            +G  +  P   G +    G GCFWGVE  + ++ GV  T VGY+ G  P+P YR VCSG T H E+V V +DP+      L++     HDPT   RQG DVGTQYRS  Y     +A   R+  S   + L+     +I TE  ++    +Y AE+YHQQYL K
Sbjct:   35 LGTPITGPWKEGQKRVWIGLGCFWGVEQMYWKMDGVESTSVGYAGGYTPNPTYREVCSGRTGHTEIVEVVYDPEKITLAELVARGLEAHDPTQGYRQGNDVGTQYRSAFYVETGEEAETVRQIVSTYGETLKSHGFGEITTEVDVITPADYYLAEDYHQQYLHK 198          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_CAMJR (Peptide methionine sulfoxide reductase msrA OS=Campylobacter jejuni (strain RM1221) GN=msrA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.855e-28
Identity = 64/151 (42.38%), Postives = 94/151 (62.25%), Query Frame = 2
Query:  149 GAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQS 601
            G GCFW +E  F+R+ GV  TEVGYS G  P+P+Y  VC+G  N +EVV++ +D +      +L +F+  HDPT++++QG D+G QYRS I+Y NE    LA+  +E +Q      +KIVT+I   + +Y+AE YHQ Y      +G  Q+
Sbjct:    7 GGGCFWCIEAVFERLKGVINTEVGYSGGK-PNPSYESVCNGDGN-IEVVKINYDEKQISLLEILILFFKIHDPTSIDKQGEDIGIQYRSIIFYENEEDKILAQNFIEEQQKIF--SKKIVTKISRLQTYYKAENYHQHYFINNPDQGYCQA 153          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_BACSU (Peptide methionine sulfoxide reductase msrA OS=Bacillus subtilis GN=msrA PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.855e-28
Identity = 62/147 (42.18%), Postives = 82/147 (55.78%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            E A F  GCFW +   F    G+ K   GY+ G+  +P Y  VCS TT H E V++ F P V PY  LL +FW + DPT    Q AD G+ YR+ I+Y+N+ Q  LA  S +        +  IVT+IL A+ FY AE YHQ + +K
Sbjct:    6 EIATFAGGCFWCMVKPFDEQPGIEKVVSGYTGGHTENPTYEEVCSETTGHREAVQITFHPDVFPYEKLLELFWQQIDPTDAGGQFADRGSSYRAAIFYHNDKQKELAEASKQRLAESGIFKDPIVTDILKAEPFYEAEGYHQHFYKK 152          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA1_RHILO (Peptide methionine sulfoxide reductase msrA 1 OS=Rhizobium loti GN=msrA1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.157e-27
Identity = 67/147 (45.58%), Postives = 84/147 (57.14%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            E A    GCFWG++   +R  GV  T VGYS G+V +  YR    GT  H E + + FDP V  Y  LL  F+  HDPTT NRQG DVG  YRS IYY ++ Q R+A +++           K+VTE+ PA  F+ AE  HQ YLEK
Sbjct:    6 ERAVLAGGCFWGMQDLIRRYPGVISTRVGYSGGDVANATYRN--HGT--HAEAIEINFDPAVISYRTLLERFFQIHDPTTRNRQGNDVGMSYRSAIYYTSDEQKRVAEDTIADVDASGLWPGKVVTEVAPAGAFWEAEPEHQDYLEK 148          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_STRPD (Peptide methionine sulfoxide reductase msrA OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=msrA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.511e-27
Identity = 61/157 (38.85%), Postives = 88/157 (56.05%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSA 604
            E A F  GCFW +   F+   G+     GY+ G++P+P+Y  VC+ TT H E V + FDP+   Y +L+ ++W + DPT    Q  D G  YR  IYY  E Q  +A +S  + Q   +  + IVT I PA+ FY AE+YHQ + +K   R ++ SA
Sbjct:    2 ERAIFAGGCFWCMVQPFEEQAGILSVRSGYTGGHLPNPSYEQVCAKTTGHTEAVEIIFDPKQIAYKDLVELYWAQTDPTDAFGQFEDRGDNYRPVIYYTTERQKEIAEQSKASLQASGRFDQPIVTTIEPAEPFYLAEDYHQGFYKKNPKRYAQSSA 158          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_CORML5.192e-2840.12Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_CORGL5.192e-2840.12Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA2_RHILO5.192e-2843.87Peptide methionine sulfoxide reductase msrA 2 OS=R... [more]
MSRA_ARTS26.780e-2843.54Peptide methionine sulfoxide reductase msrA OS=Art... [more]
MSRA_STRA38.855e-2838.99Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_COREF8.855e-2840.85Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_CAMJR8.855e-2842.38Peptide methionine sulfoxide reductase msrA OS=Cam... [more]
MSRA_BACSU8.855e-2842.18Peptide methionine sulfoxide reductase msrA OS=Bac... [more]
MSRA1_RHILO1.157e-2745.58Peptide methionine sulfoxide reductase msrA 1 OS=R... [more]
MSRA_STRPD1.511e-2738.85Peptide methionine sulfoxide reductase msrA OS=Str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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