DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_MYCMM (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=msrA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.346e-26
Identity = 64/145 (44.14%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            A    GCFWG++   ++  GV  T VGYS G+V +  YR    GT  H E V + FDPQ   Y  LL  F+  HDPTT NRQG D GT YRS IYY ++ Q R+A +++   +       K+VTE+ PA  F+ AE  HQ YL++
Sbjct:    7 AILAGGCFWGMQDLIRKQPGVIATRVGYSGGDVANATYRN--HGT--HAEAVEIIFDPQATDYRTLLEFFFQIHDPTTPNRQGNDRGTSYRSAIYYLDDEQKRVALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR 147          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_MYCLE (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium leprae GN=msrA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.288e-26
Identity = 59/144 (40.97%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLE 571
            A    GCFWG++  F+R  GV  T VGY+ G  P+  YR        H E V + +DP +  Y  LL  F+  HDPTT NRQG D GT YRS I+Y ++ Q ++A +++ A +       K+VTE+  A+ F+ AE  HQ YL+
Sbjct:    9 AILAGGCFWGIQNLFRRQPGVISTRVGYTGGGTPNATYR----NHGMHAEAVEIIYDPAITDYRTLLEFFFQIHDPTTRNRQGNDQGTSYRSAIFYLDDEQKKVALDTIAAVEASSLWPGKVVTEVSLAEDFWEAEPEHQDYLQ 148          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_MYCLB (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium leprae (strain Br4923) GN=msrA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.288e-26
Identity = 59/144 (40.97%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLE 571
            A    GCFWG++  F+R  GV  T VGY+ G  P+  YR        H E V + +DP +  Y  LL  F+  HDPTT NRQG D GT YRS I+Y ++ Q ++A +++ A +       K+VTE+  A+ F+ AE  HQ YL+
Sbjct:    9 AILAGGCFWGIQNLFRRQPGVISTRVGYTGGGTPNATYR----NHGMHAEAVEIIYDPAITDYRTLLEFFFQIHDPTTRNRQGNDQGTSYRSAIFYLDDEQKKVALDTIAAVEASSLWPGKVVTEVSLAEDFWEAEPEHQDYLQ 148          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_CLAM3 (Peptide methionine sulfoxide reductase msrA OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=msrA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.288e-26
Identity = 61/145 (42.07%), Postives = 87/145 (60.00%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRG 589
            GCFW ++  ++ + GV     GY  G+   P+Y  VC+G T H E V+V FD +V P   +L VF+  HDP  LNRQGADVGTQYRS ++  +  Q +L R+++ ++  E+ D    VT I P   +Y AE+YHQ +  K  G+G
Sbjct:    9 GCFWCLDAVYRTLDGVQDVISGYIGGHTAHPSYDAVCTGATGHAEAVKVVFDEEVIPADVILDVFFTLHDPRQLNRQGADVGTQYRSAMFPADAAQEQLFRDAI-SRAGELWD-GTAVTTIEPVGTWYDAEDYHQDFFAKNPGQG 151          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA2_SYNY3 (Peptide methionine sulfoxide reductase msrA 2 OS=Synechocystis sp. (strain PCC 6803) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.082e-25
Identity = 58/150 (38.67%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWG-RHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWG+E  F+ V GV   + GYS G     NY  V  G T+H E + + +DP    Y  LL +F+   HDPT +NRQG D G QYRS I+     Q ++A+  ++  +      + I TE+     FY AE+YHQ ++++
Sbjct:   35 GTEKAVFAGGCFWGLEAMFEEVRGVKDVQTGYSGGTEATANYARVSGGGTDHAESIEIVYDPAQVSYGELLKIFFSVGHDPTQVNRQGVDQGRQYRSAIFATTPEQKQVAQAYIDQLEESQAFDQAIATEVNDFDAFYPAEDYHQDFVQR 184          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_STRAW (Peptide methionine sulfoxide reductase msrA OS=Streptomyces avermitilis GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.414e-25
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            A    GCFWG+E   +R+ GV+ T VGY+ G+VP+  YR    GT  H E + + FDP    +  +L  F+  HDP+T NRQG D+G  YRS IYY ++ Q R+A +++           K+VTE+ P   F+ AE  HQ YLE+
Sbjct:    8 AVLAGGCFWGMEDLIRRLPGVTATRVGYTGGDVPNATYRN--HGT--HAEAIEILFDPARTDFRAILEFFFQIHDPSTKNRQGNDIGLSYRSAIYYVDDEQKRIAEDTIADVDASGLWPGKVVTEVEPVGPFWEAEPEHQDYLER 148          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_MYCSS (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium sp. (strain MCS) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.414e-25
Identity = 60/148 (40.54%), Postives = 81/148 (54.73%), Query Frame = 2
Query:  131 HEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            H+ A    GCFWG++   ++  GV  T VGY+ G    P YR        H E + + +DP    Y  LL  F+  HDPTT NRQG DVGT YRS I+Y ++ Q R+A +++           K+VTE+ PA  F+ AE  HQ YLE+
Sbjct:    4 HKKAILAGGCFWGMQDLIRKQPGVVSTRVGYTGGQNDHPTYR----NHPGHAESIEITYDPAQTDYRALLEFFFQIHDPTTKNRQGNDVGTSYRSAIFYVDDEQKRVALDTIADVDASGLWPGKVVTEVTPAGEFWEAEPEHQDYLER 147          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_MYCSK (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium sp. (strain KMS) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.414e-25
Identity = 60/148 (40.54%), Postives = 81/148 (54.73%), Query Frame = 2
Query:  131 HEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            H+ A    GCFWG++   ++  GV  T VGY+ G    P YR        H E + + +DP    Y  LL  F+  HDPTT NRQG DVGT YRS I+Y ++ Q R+A +++           K+VTE+ PA  F+ AE  HQ YLE+
Sbjct:    4 HKKAILAGGCFWGMQDLIRKQPGVVSTRVGYTGGQNDHPTYR----NHPGHAESIEITYDPAQTDYRALLEFFFQIHDPTTKNRQGNDVGTSYRSAIFYVDDEQKRVALDTIADVDASGLWPGKVVTEVTPAGEFWEAEPEHQDYLER 147          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_MYCSJ (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium sp. (strain JLS) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.414e-25
Identity = 60/148 (40.54%), Postives = 81/148 (54.73%), Query Frame = 2
Query:  131 HEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            H+ A    GCFWG++   ++  GV  T VGY+ G    P YR        H E + + +DP    Y  LL  F+  HDPTT NRQG DVGT YRS I+Y ++ Q R+A +++           K+VTE+ PA  F+ AE  HQ YLE+
Sbjct:    4 HKKAILAGGCFWGMQDLIRKQPGVVSTRVGYTGGQNDHPTYR----NHPGHAESIEITYDPAQTDYRALLEFFFQIHDPTTKNRQGNDVGTSYRSAIFYVDDDQKRVALDTIADVDASGLWPGKVVTEVTPAGEFWEAEPEHQDYLER 147          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_STAAC (Peptide methionine sulfoxide reductase msrA OS=Staphylococcus aureus (strain COL) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.846e-25
Identity = 56/153 (36.60%), Postives = 85/153 (55.56%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQ 598
            A F  GCFW +   F    G+ K   GY  G++ +P Y  V SGT+ H+E V +Q+D  +  Y  LL +F+   DP     Q  D G QY++ I+Y N+ Q  LA   +E  +  +   + I T+ILPA +FY+AE+YHQ + +K   R +++
Sbjct:    6 AYFAGGCFWCMTKPFDTFDGIEKVTSGYMGGHIENPTYEQVKSGTSGHLETVEIQYDVALFSYNKLLEIFFSVIDPLDTGGQYQDRGPQYQTAIFYTNDHQKELAETYIEQLKNTINADKAIATKILPASQFYKAEDYHQDFYKKNPERYAEE 158          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_MYCMM6.346e-2644.14Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCLE8.288e-2640.97Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCLB8.288e-2640.97Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_CLAM38.288e-2642.07Peptide methionine sulfoxide reductase msrA OS=Cla... [more]
MSRA2_SYNY31.082e-2538.67Peptide methionine sulfoxide reductase msrA 2 OS=S... [more]
MSRA_STRAW1.414e-2541.38Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_MYCSS1.414e-2540.54Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCSK1.414e-2540.54Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCSJ1.414e-2540.54Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_STAAC1.846e-2536.60Peptide methionine sulfoxide reductase msrA OS=Sta... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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