DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_CLAMS (Peptide methionine sulfoxide reductase msrA OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=msrA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.113e-25
Identity = 60/145 (41.38%), Postives = 87/145 (60.00%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRG 589
            GCFW ++  ++ + GV     GY  G+   P+Y  VC+G T H E V+V FD +V P   +L VF+  HDP  LNRQGADVGTQYRS ++  +  Q +L R+++ A+  ++ D    VT I P   ++ AE+YHQ +  K  G+G
Sbjct:    9 GCFWCLDAVYRTLDGVQDVISGYIGGHTAHPSYDAVCTGATGHAEAVKVVFDEEVIPADVILDVFFTLHDPRQLNRQGADVGTQYRSAMFPADAEQEQLFRDAI-ARAGDLLDGTP-VTTIEPLGTWHDAEDYHQDFFAKNPGQG 151          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRAB_HELPY (Peptide methionine sulfoxide reductase msrA/msrB OS=Helicobacter pylori GN=msrAB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.017e-25
Identity = 61/168 (36.31%), Postives = 90/168 (53.57%), Query Frame = 2
Query:   92 AVGPDLDRPDNPGHEFAQ-------FGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            A+G  +   +N G +  +          GCFWG+E   +R+ GV     GY+ G     NY  +    ++H E V+V +DP+      LL  ++   DP ++N+QG DVG QYR+GIYY N     +   +++A Q E+K   KI  E+ P K + RAEEYHQ YL+K
Sbjct:   15 AIGAIMQASENMGSQHQKTDERVIYLAGGCFWGLEAYMERIYGVIDASSGYANGKTSSTNYEKLHE--SDHAESVKVIYDPKKISLDKLLRYYFKVVDPVSVNKQGNDVGRQYRTGIYYVNSADKEVIDHALKALQKEVKG--KIAIEVEPLKNYVRAEEYHQDYLKK 178          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_NOCFA (Peptide methionine sulfoxide reductase msrA OS=Nocardia farcinica GN=msrA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.197e-24
Identity = 58/143 (40.56%), Postives = 78/143 (54.55%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYL 568
            A    GCFWG++   +R  GV  T VGY+ G    P YR        H E V + +DP+   Y  LL  F+  HDPTT +RQG D+GT YRS I+Y ++ Q R+A +++           K+VTE+ PA  F+ AE  HQ YL
Sbjct:    7 AILAGGCFWGMQDLIRRQPGVVSTRVGYTGGTNDHPTYR----NHPGHAEAVEIVYDPERTDYRALLEFFFQIHDPTTKDRQGNDIGTSYRSAIFYLDDEQRRVAEDTIADVDASGLWPGKVVTEVTPASEFWEAEPEHQDYL 145          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_LACSS (Peptide methionine sulfoxide reductase msrA OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=msrA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.563e-24
Identity = 58/147 (39.46%), Postives = 78/147 (53.06%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            E A F  GCFW +   F +  G+ K   GY+ G+V +P Y  VCS TT H E V + FDP V  Y  L+ ++W + DPT    Q  D G  YR  I+  ++ Q  +A  S E      +    IVT+I  AK FY AE+YHQ + +K
Sbjct:    4 ETAIFAGGCFWCMVHPFDQQPGILKVVSGYTGGHVANPTYEQVCSHTTGHTEAVEITFDPAVISYAELVEIYWRQTDPTDAMGQFQDRGDSYRPVIFVNSDQQRSIAEASKEKLIASGRFNEPIVTQIEAAKPFYPAEDYHQDFYKK 150          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPA (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium paratuberculosis GN=msrA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            A    GCFWG++   ++  GV  T VGY+ G+VP+  YR    GT  H E V + +DP V  Y  +L  F+  HDPTT +RQG D G  YRS I+Y ++ Q R+A +++   +       K+VTE+ PA  F+ AE  HQ YL++
Sbjct:    7 AILAGGCFWGMQELIRKQPGVVSTRVGYTGGDVPNATYRN--HGT--HAEAVEIIYDPAVTDYRQILEFFFQIHDPTTKDRQGNDRGPSYRSAIFYTDDEQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR 147          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA2_STAAW (Peptide methionine sulfoxide reductase msrA 2 OS=Staphylococcus aureus (strain MW2) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ----RKIVTEILPAKRFYRAEEYHQQYLEK 574
            E+A    GCFW +   F    G+     GYS G+V +P Y  VC+  T HVE V++ FDP+V  + N+L +++   DPT    Q  D G  Y+  I+Y++E Q + A    E K+ ++ +Q    + ++T I P K FY AE+YHQ Y +K
Sbjct:    4 EYATLAGGCFWCMVKPFTSYPGIKSVVSGYSGGHVDNPTYEQVCTNQTGHVEAVQITFDPEVTSFENILDIYFKTFDPTDDQGQFFDRGESYQPVIFYHDEHQKKAA----EFKKQQLNEQGIFKKPVITPIKPYKNFYPAEDYHQDYYKK 150          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA2_STAAS (Peptide methionine sulfoxide reductase msrA 2 OS=Staphylococcus aureus (strain MSSA476) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ----RKIVTEILPAKRFYRAEEYHQQYLEK 574
            E+A    GCFW +   F    G+     GYS G+V +P Y  VC+  T HVE V++ FDP+V  + N+L +++   DPT    Q  D G  Y+  I+Y++E Q + A    E K+ ++ +Q    + ++T I P K FY AE+YHQ Y +K
Sbjct:    4 EYATLAGGCFWCMVKPFTSYPGIKSVVSGYSGGHVDNPTYEQVCTNQTGHVEAVQITFDPEVTSFENILDIYFKTFDPTDDQGQFFDRGESYQPVIFYHDEHQKKAA----EFKKQQLNEQGIFKKPVITPIKPYKNFYPAEDYHQDYYKK 150          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA2_STAAN (Peptide methionine sulfoxide reductase msrA 2 OS=Staphylococcus aureus (strain N315) GN=msrA2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ----RKIVTEILPAKRFYRAEEYHQQYLEK 574
            E+A    GCFW +   F    G+     GYS G+V +P Y  VC+  T HVE V++ FDP+V  + N+L +++   DPT    Q  D G  Y+  I+Y++E Q + A    E K+ ++ +Q    + ++T I P K FY AE+YHQ Y +K
Sbjct:    4 EYATLAGGCFWCMVKPFTSYPGIKSVVSGYSGGHVDNPTYEQVCTNKTGHVEAVQITFDPEVTSFENILDIYFKTFDPTDDQGQFFDRGESYQPVIFYHDEHQKKAA----EFKKQQLNEQGIFKKPVITPIKPYKNFYPAEDYHQDYYKK 150          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA2_STAAM (Peptide methionine sulfoxide reductase msrA 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=msrA2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ----RKIVTEILPAKRFYRAEEYHQQYLEK 574
            E+A    GCFW +   F    G+     GYS G+V +P Y  VC+  T HVE V++ FDP+V  + N+L +++   DPT    Q  D G  Y+  I+Y++E Q + A    E K+ ++ +Q    + ++T I P K FY AE+YHQ Y +K
Sbjct:    4 EYATLAGGCFWCMVKPFTSYPGIKSVVSGYSGGHVDNPTYEQVCTNKTGHVEAVQITFDPEVTSFENILDIYFKTFDPTDDQGQFFDRGESYQPVIFYHDEHQKKAA----EFKKQQLNEQGIFKKPVITPIKPYKNFYPAEDYHQDYYKK 150          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA2_STAA8 (Peptide methionine sulfoxide reductase msrA 2 OS=Staphylococcus aureus (strain NCTC 8325) GN=msrA2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ----RKIVTEILPAKRFYRAEEYHQQYLEK 574
            E+A    GCFW +   F    G+     GYS G+V +P Y  VC+  T HVE V++ FDP+V  + N+L +++   DPT    Q  D G  Y+  I+Y++E Q + A    E K+ ++ +Q    + ++T I P K FY AE+YHQ Y +K
Sbjct:    4 EYATLAGGCFWCMVKPFTSYPGIKSVVSGYSGGHVDNPTYEQVCTNQTGHVEAVQITFDPEVTSFENILDIYFKTFDPTDDQGQFFDRGESYQPVIFYHDEHQKKAA----EFKKQQLNEQGIFKKPVITPIKPYKNFYPAEDYHQDYYKK 150          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_CLAMS4.113e-2541.38Peptide methionine sulfoxide reductase msrA OS=Cla... [more]
MSRAB_HELPY7.017e-2536.31Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_NOCFA1.197e-2440.56Peptide methionine sulfoxide reductase msrA OS=Noc... [more]
MSRA_LACSS1.563e-2439.46Peptide methionine sulfoxide reductase msrA OS=Lac... [more]
MSRA_MYCPA2.666e-2440.69Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA2_STAAW2.666e-2437.09Peptide methionine sulfoxide reductase msrA 2 OS=S... [more]
MSRA2_STAAS2.666e-2437.09Peptide methionine sulfoxide reductase msrA 2 OS=S... [more]
MSRA2_STAAN2.666e-2437.09Peptide methionine sulfoxide reductase msrA 2 OS=S... [more]
MSRA2_STAAM2.666e-2437.09Peptide methionine sulfoxide reductase msrA 2 OS=S... [more]
MSRA2_STAA82.666e-2437.09Peptide methionine sulfoxide reductase msrA 2 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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