DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_LEUMM (Peptide methionine sulfoxide reductase msrA OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=msrA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.482e-24
Identity = 58/159 (36.48%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEK 610
            E A F  GCFW +   F  + G+ K   GY+ G+V +P Y  V + TT H E V++ FD +   Y  L+ ++W + DPT    Q  D G  YR  I+  +  Q  +A ES  A     +    IVT+I  AK FY AEEYHQ + +K   R + + A++
Sbjct:    4 ETAIFAGGCFWCMVQPFDSLDGIEKVRSGYTGGHVENPTYEQVLTHTTGHTEAVKIWFDSEKISYRELVEIYWEQTDPTDAMGQFQDRGDNYRPVIFVNSPEQREIAEESRAALAASNRFDEPIVTKIEDAKPFYEAEEYHQDFYKKDPEREALEMAQR 162          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRAB_STRGC (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=msrAB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.940e-24
Identity = 58/143 (40.56%), Postives = 86/143 (60.14%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGG 583
            GCFWG+E  F R+ GV KT VGY+ G V   NY+L+    T+H E V + +D +      +L  ++   DP ++N+QG DVG QYR+G+YY N+   +   E + A+Q E +  +KI  E+ P + +  AE+YHQ YL+K  G
Sbjct:    9 GCFWGLEEYFSRIEGVKKTTVGYANGQVESTNYQLI--HQTDHAETVHLIYDEKRVSLREILLYYFRVIDPLSVNKQGNDVGRQYRTGVYYTNQAD-KAVIEQVFAEQ-EKQLGQKIAVELEPLRHYVLAEDYHQDYLKKNPG 147          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRAB_VIBCH (Peptide methionine sulfoxide reductase msrA/msrB OS=Vibrio cholerae GN=msrAB PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.323e-23
Identity = 60/165 (36.36%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  131 HEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLA-RESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDE 622
            ++ A    GCFW  E   +++ GV     GY+ G+V +P Y+ V SG T H+EV++V FDP++  Y  +L  F+   DPT       D G QYR  I+Y+N  Q  +A R  ME  QL +  ++ + TE++  K+F+ AE+YHQ Y +K   R +      G D+
Sbjct:   39 YQQATLAGGCFWCTESDMEKLPGVVDVISGYAGGDVDNPTYKQVSSGKTGHIEVIQVTFDPKIVTYEQVLDNFFRHIDPTDDQGSFVDRGEQYRPAIFYHNAEQLEVAKRFMMEIDQLGI-FKKPLKTELIEFKKFWPAEDYHQDYYKKNKVRYNYYRYASGRDQ 202          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP3 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M3 GN=msrAB PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.728e-23
Identity = 61/140 (43.57%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            GCFWGVE  F +V GV     GY+ G     NY+L+    T H E V V +D        LL  F+   DPT+LN+QG D G+QYR+GIYY ++    +  E  + K  + K  +KIV E  P K F +AEEYHQ YL+K
Sbjct:    7 GCFWGVEEYFSQVDGVLDAVSGYANGRGDTTNYQLIHQ--TGHAETVEVTYDANRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYK--KKIVVEKAPLKHFIKAEEYHQDYLKK 142          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_STRMU (Peptide methionine sulfoxide reductase msrA OS=Streptococcus mutans GN=msrA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.257e-23
Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSA 604
            E A F  GCFW +   F+   G+     GY+ G+V +P Y  VCS  T H E V + FD     Y +L+ ++W + DPT    Q  D G  YR  I+Y++E Q ++A +S    Q      R IVT I  A+ FY AE+ HQ +  K   R ++ SA
Sbjct:    2 ERAIFAGGCFWCMVQPFEEQDGILSVRSGYTGGHVVNPTYEQVCSKMTGHTEAVEIIFDESKISYADLVEIYWRQTDPTDSFGQFEDRGDNYRPVIFYFDEQQRKIAEQSKANLQASGHFNRPIVTTIEAAQPFYEAEKDHQAFYRKNPERYARSSA 158          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA2_STAAR (Peptide methionine sulfoxide reductase msrA 2 OS=Staphylococcus aureus (strain MRSA252) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.257e-23
Identity = 54/151 (35.76%), Postives = 83/151 (54.97%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ----RKIVTEILPAKRFYRAEEYHQQYLEK 574
            E+A    GCFW +   F    G+     GYS G+  +P Y  VC+  T HVE V++ FDP+V  + N+L +++   DPT    Q  D G  Y+  I+Y+++ Q + A    E K+ ++ +Q    + ++T I P K FY AE+YHQ Y +K
Sbjct:    4 EYATLAGGCFWCMVKPFTSYPGIKSVVSGYSGGHADNPTYEQVCTNQTGHVEAVQITFDPEVTSFENILDIYFKTFDPTDDQGQFFDRGESYQPVIFYHDKHQKKAA----EFKKQQLNEQGIFKKPVITPIKPYKNFYPAEDYHQDYYKK 150          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPE (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma penetrans GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.948e-23
Identity = 51/140 (36.43%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            GCFWG+E  +     +  T VGY    + +P Y+ VC+  T+ VE V + +D QV     ++ + +   DPT++N+QG D+G QYR+GIY  +  +    +E +   +L+    + I TE++    +Y AEEYHQ+YLEK
Sbjct:   10 GCFWGIEQYYNLNQKIISTNVGYLNSKIDNPTYKDVCNNITDAVEAVELTYDDQVISLNEIIDLLFKVIDPTSINKQGNDIGRQYRTGIYSRDSNELMAIQEKI--NELQNNYSKLIQTEVMLVDNYYLAEEYHQKYLEK 147          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_MYCA5 (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma arthritidis (strain 158L3-1) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.850e-23
Identity = 53/140 (37.86%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            GCFWGV+   + + G+ KT VGY+   + +P Y LV S  T+ VE V V +D  +    +++   +   DPT  N QG D G QYR+G Y+ ++    + RE M   +   K ++ + TEILP   +Y AE+YHQ Y +K
Sbjct:    9 GCFWGVQGFLKTIKGIKKTTVGYANSLLENPTYELVKSHVTDAVETVEVIYDENILSLKDIVKKLFAVIDPTARNYQGPDHGRQYRNGFYFVDQEDGVMLRELM--LEFSKKYEKPLATEILPLDNYYLAEDYHQDYFDK 146          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP8 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M18 GN=msrAB PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.850e-23
Identity = 60/140 (42.86%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            GCFWGVE  F +V GV     GY+ G     NY+L+    T H E V V +D        LL  F+   DPT+LN+QG D G+QYR+GIYY ++    +  E  + K  + K  +KIV E  P K F +AE+YHQ YL+K
Sbjct:    7 GCFWGVEEYFSQVDGVLDAVSGYANGRGDTTNYQLIHQ--TGHAETVEVAYDTNRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYK--KKIVVEKAPLKHFIKAEDYHQDYLKK 142          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP6 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M6 GN=msrAB PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.850e-23
Identity = 60/140 (42.86%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            GCFWGVE  F +V GV     GY+ G     NY+L+    T H E V V +D        LL  F+   DPT+LN+QG D G+QYR+GIYY ++    +  E  + K  + K  +KIV E  P K F +AE+YHQ YL+K
Sbjct:    7 GCFWGVEEYFSQVDGVLDAVSGYANGRGDTTNYQLIHQ--TGHAETVEVAYDANRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYK--KKIVVEKAPLKHFIKAEDYHQDYLKK 142          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_LEUMM3.482e-2436.48Peptide methionine sulfoxide reductase msrA OS=Leu... [more]
MSRAB_STRGC5.940e-2440.56Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_VIBCH1.323e-2336.36Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_STRP31.728e-2343.57Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_STRMU2.257e-2336.94Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA2_STAAR2.257e-2335.76Peptide methionine sulfoxide reductase msrA 2 OS=S... [more]
MSRA_MYCPE2.948e-2336.43Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCA53.850e-2337.86Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRAB_STRP83.850e-2342.86Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_STRP63.850e-2342.86Peptide methionine sulfoxide reductase msrA/msrB O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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