DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSAB2_STRR6 (Peptide methionine sulfoxide reductase msrA/msrB 2 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=msrAB2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.583e-19
Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  131 HEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            HE    G GCFWGVE  F RV GV+    GY+ G      Y L+    T H E V V +D +      +L  ++   +PT+ N+QG DVGTQYR+G+YY ++    +  +  +  ++  K  + +  E    K F  AE+YHQ YL+K
Sbjct:    2 HEIYLAG-GCFWGVEEYFSRVPGVTDAVSGYANGRGETTKYELI--NQTGHAETVHVTYDAKQISLKEILLHYFRIINPTSKNKQGNDVGTQYRTGVYYTDDKDLEVINQVFD--EVAKKYDQPLAVEKENLKNFVVAEDYHQDYLKK 144          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSAB2_STRPN (Peptide methionine sulfoxide reductase msrA/msrB 2 OS=Streptococcus pneumoniae GN=msrAB2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.583e-19
Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  131 HEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            HE    G GCFWGVE  F RV GV+    GY+ G      Y L+    T H E V V +D +      +L  ++   +PT+ N+QG DVGTQYR+G+YY ++    +  +  +  ++  K  + +  E    K F  AE+YHQ YL+K
Sbjct:    2 HEIYLAG-GCFWGVEEYFSRVPGVTDAVSGYANGRGETTKYELI--NQTGHAETVHVTYDAKQISLKEILLHYFRIINPTSKNKQGNDVGTQYRTGVYYTDDKDLEVINQVFD--EVAKKYDQPLAVEKENLKNFVVAEDYHQDYLKK 144          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_DROME (Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.514e-19
Identity = 55/149 (36.91%), Postives = 79/149 (53.02%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHD---PTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKG 577
            A FG GCFWG E  +    GV +T VGY+ G+   P YR +     +H EV+ + +DP V  +  LL +FW  H+    T + R       QY S I Y++E Q ++A  S + ++ E +    I TEI   + FY AE YHQ+Y  +G
Sbjct:   42 ATFGMGCFWGAESLYGATRGVLRTTVGYAGGSSDLPTYRKM----GDHTEVLEIDYDPTVISFKELLDLFWNNHEYGLTTPIKR-------QYASLILYHDEEQKQVAHAS-KLEEQERRAPEIITTEIASKENFYPAEAYHQKYRLQG 178          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA2_RHIME (Peptide methionine sulfoxide reductase msrA 2 OS=Rhizobium meliloti GN=msrA2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18
Identity = 57/144 (39.58%), Postives = 76/144 (52.78%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQY 565
            ++A F  GCFW VE  F  V GV +T  GY+ G   +P Y     G   H EVVRV+FDP    Y  L+ V +   DPT  + Q  D G  Y + I+  NE QA  A+   E  + E +  R IVT +  A +F+ AE+YHQ +
Sbjct:   24 QYAIFAGGCFWCVESDFDAVPGVLETISGYAGGKSANPTYEDYAKG--GHREVVRVKFDPDRVSYAELVGVLFRTTDPTDGDGQFCDRGFAYTTAIHALNERQAMDAK--AEKIKAEAELGRPIVTPVEGAAKFWPAEDYHQDF 163          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPU (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma pulmonis GN=msrA PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.308e-18
Identity = 55/141 (39.01%), Postives = 77/141 (54.61%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ-RKIVTEILPAKRFYRAEEYHQQYLEK 574
            GCFWGVE  FQ+V GV  T+  Y  G      Y+ VC G ++HVE VRV +D       +L  ++    +P +LN+QG D G QYR G+Y Y++    L ++  +  +  MK + +K   EI   +    AEEYHQ YL K
Sbjct:   10 GCFWGVERYFQKVKGVLDTKACYINGGFEGVKYKEVCEG-SSHVEAVRVIYDNSKITEEDLWKLYLRIINPYSLNKQGNDRGVQYRIGLYSYDKD---LLKKFSDLNEAFMKSEGKKNYIEIQKVEDVTLAEEYHQNYLLK 146          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSAB2_STRR62.583e-1936.49Peptide methionine sulfoxide reductase msrA/msrB 2... [more]
MSAB2_STRPN2.583e-1936.49Peptide methionine sulfoxide reductase msrA/msrB 2... [more]
MSRA_DROME7.514e-1936.91Peptide methionine sulfoxide reductase OS=Drosophi... [more]
MSRA2_RHIME1.674e-1839.58Peptide methionine sulfoxide reductase msrA 2 OS=R... [more]
MSRA_MYCPU8.308e-1839.01Peptide methionine sulfoxide reductase msrA OS=Myc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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