DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_METM7 (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.154e-35
Identity = 75/147 (51.02%), Postives = 93/147 (63.27%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            E A FG GCFW  E  F+ V GV  TEVGY  GNV +P Y  VC G + H+EVV+V +D ++  Y +LL +FW  HDPTT NRQG DVG QY S I+Y+ + Q  +A +S+E  Q  M    KIVT I  A  F+ AEEYHQ+Y  K
Sbjct:    5 ETAVFGMGCFWSAEELFRHVDGVISTEVGYMGGNVKNPTYGQVCRGKSGHIEVVKVSYDSKIITYDDLLELFWKNHDPTTPNRQGWDVGEQYSSHIFYFTDEQRIVAEKSLEKMQCYM--DLKIVTAIKKASDFFPAEEYHQKYFMK 149          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECOSE (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain SE11) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.154e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R+I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDQGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SACD2 (Peptide methionine sulfoxide reductase msrA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 76/145 (52.41%), Postives = 92/145 (63.45%), Query Frame = 2
Query:  146 FGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQ--LEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            FG GCFWG E  F ++ GV  T VGYS G  P+P Y  VCSG+T H EVV V ++P    +  LL+VFW  H+PT   RQG D+GTQYRSG+Y Y++ QA  A  S +  Q  L  K   +I TEI+ AK FY AE YHQQYL K
Sbjct:   53 FGLGCFWGAERKFWQLPGVYVTAVGYSAGFTPNPTYEEVCSGSTGHNEVVLVVYNPSQVSFKKLLAVFWESHNPTQGMRQGNDLGTQYRSGVYVYSDEQAEQAEHSKQVVQAMLTEKGYGEITTEIIKAKEFYFAEAYHQQYLAK 197          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_KLEP3 (Peptide methionine sulfoxide reductase msrA OS=Klebsiella pneumoniae (strain 342) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 80/152 (52.63%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VRV +DPQV  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   A+ S+   Q  M    D R I TEI  AK FY AE+ HQQYL K
Sbjct:   42 GMEVALFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGQTGHAEAVRVVYDPQVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQTAAAKASLARFQAAMNDAHDTRHITTEIATAKPFYYAEDDHQQYLYK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ESCF3 (Peptide methionine sulfoxide reductase msrA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 77/152 (50.66%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQ---ARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR +RE  +A  +   D R + TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGETGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDSAARASRERFQAAMIAANDDRPVTTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECOSM (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R+I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLU (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R+I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECO81 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O81 (strain ED1a) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R+I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECO7I (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R+I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_YERPY (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G + A F  GCFWG E  F +  GV  T  GYS G+ P+P Y  VCSG T H EVVRV FDP V  Y  LL +FW  HDP    RQG DVGTQYRS IY     Q   A +S E  Q  M+   DQR I +EI  A  FY AE+ HQQYL K
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_METM71.154e-3551.02Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_ECOSE1.154e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_SACD21.507e-3552.41Peptide methionine sulfoxide reductase msrA OS=Sac... [more]
MSRA_KLEP31.507e-3552.63Peptide methionine sulfoxide reductase msrA OS=Kle... [more]
MSRA_ESCF31.507e-3550.66Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOSM1.507e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOLU1.507e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO811.507e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO7I1.507e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_YERPY1.968e-3551.97Peptide methionine sulfoxide reductase msrA OS=Yer... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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