DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_YERPS (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G + A F  GCFWG E  F +  GV  T  GYS G+ P+P Y  VCSG T H EVVRV FDP V  Y  LL +FW  HDP    RQG DVGTQYRS IY     Q   A +S E  Q  M+   DQR I +EI  A  FY AE+ HQQYL K
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_YERPP (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis (strain Pestoides F) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G + A F  GCFWG E  F +  GV  T  GYS G+ P+P Y  VCSG T H EVVRV FDP V  Y  LL +FW  HDP    RQG DVGTQYRS IY     Q   A +S E  Q  M+   DQR I +EI  A  FY AE+ HQQYL K
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_YERPN (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G + A F  GCFWG E  F +  GV  T  GYS G+ P+P Y  VCSG T H EVVRV FDP V  Y  LL +FW  HDP    RQG DVGTQYRS IY     Q   A +S E  Q  M+   DQR I +EI  A  FY AE+ HQQYL K
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_YERPG (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G + A F  GCFWG E  F +  GV  T  GYS G+ P+P Y  VCSG T H EVVRV FDP V  Y  LL +FW  HDP    RQG DVGTQYRS IY     Q   A +S E  Q  M+   DQR I +EI  A  FY AE+ HQQYL K
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_YERPE (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G + A F  GCFWG E  F +  GV  T  GYS G+ P+P Y  VCSG T H EVVRV FDP V  Y  LL +FW  HDP    RQG DVGTQYRS IY     Q   A +S E  Q  M+   DQR I +EI  A  FY AE+ HQQYL K
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_YERPB (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G + A F  GCFWG E  F +  GV  T  GYS G+ P+P Y  VCSG T H EVVRV FDP V  Y  LL +FW  HDP    RQG DVGTQYRS IY     Q   A +S E  Q  M+   DQR I +EI  A  FY AE+ HQQYL K
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_YERPA (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G + A F  GCFWG E  F +  GV  T  GYS G+ P+P Y  VCSG T H EVVRV FDP V  Y  LL +FW  HDP    RQG DVGTQYRS IY     Q   A +S E  Q  M+   DQR I +EI  A  FY AE+ HQQYL K
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_YERP3 (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G + A F  GCFWG E  F +  GV  T  GYS G+ P+P Y  VCSG T H EVVRV FDP V  Y  LL +FW  HDP    RQG DVGTQYRS IY     Q   A +S E  Q  M+   DQR I +EI  A  FY AE+ HQQYL K
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_STRGG (Peptide methionine sulfoxide reductase msrA OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 85/170 (50.00%), Postives = 97/170 (57.06%), Query Frame = 2
Query:   86 NPAVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEA--KQLEMKDQRKIVTEILPA--KRFYRAEEYHQQYLEKGGG 583
            NP VGP  D     G E A F  GCFWG E  F +  GV  T VGY  G   +P+Y   CSG T H E VRV FDP V  Y  LL +FW  H+PT   RQG DVGTQYRS IY ++  QA  A  S  A  K L     ++I TEILPA  + F+ AE YHQQYL+K  G
Sbjct:   36 NPLVGPYPD-----GLEVADFALGCFWGAERKFWQTEGVWTTLVGYQGGYTENPSYEEACSGLTGHTEAVRVVFDPAVVSYEELLKLFWESHNPTQGFRQGNDVGTQYRSAIYTHSPAQAAAADASRAAYQKVLTASGHQEITTEILPAEGRPFWPAEAYHQQYLDKNPG 200          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECO27 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 79/152 (51.97%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R+I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_YERPS1.968e-3551.97Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPP1.968e-3551.97Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPN1.968e-3551.97Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPG1.968e-3551.97Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPE1.968e-3551.97Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPB1.968e-3551.97Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPA1.968e-3551.97Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERP31.968e-3551.97Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_STRGG1.968e-3550.00Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_ECO271.968e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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