DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_AZOVD (Peptide methionine sulfoxide reductase msrA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=msrA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 82/164 (50.00%), Postives = 92/164 (56.10%), Query Frame = 2
Query:   98 GPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEM--KDQRKIVTEILPAKRFYRAEEYHQQYLEKGGG 583
            G  L  P   G   A FG GCFWG E  F +  GV  T VGY+ G  P+P Y  VCSG T H EVV V FDPQ   Y  LL VFW  HDPT   RQG D+GTQYRS IY ++ +Q   A  S E  Q E+       + TEI  A  FY AE+YHQQYL K  G
Sbjct:   38 GHPLKPPFPAGMRQALFGLGCFWGAERRFWQQPGVWTTAVGYAGGLTPNPTYEEVCSGLTGHTEVVLVVFDPQETDYRTLLKVFWEIHDPTQGMRQGNDIGTQYRSAIYCFDASQRASAEASRERFQAELAKAGYGPVTTEIADAPPFYYAEDYHQQYLAKNPG 201          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SHIBS (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 4 (strain Sb227) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 81/158 (51.27%), Postives = 90/158 (56.96%), Query Frame = 2
Query:  110 DRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            + PD  G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   38 NEPD--GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SHISS (Peptide methionine sulfoxide reductase msrA OS=Shigella sonnei (strain Ss046) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SHIFL (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri GN=msrA PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SHIF8 (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri serotype 5b (strain 8401) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SHIB3 (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVESLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SALAR (Peptide methionine sulfoxide reductase msrA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 77/152 (50.66%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYY---NETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VRV +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY       T A  +RE  ++   +  D+R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRVVYDPAVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQSTAAHASRERFQSAMADAGDERPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLI (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12) GN=msrA PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLC (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECOHS (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O9:H4 (strain HS) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_AZOVD1.968e-3550.00Peptide methionine sulfoxide reductase msrA OS=Azo... [more]
MSRA_SHIBS2.571e-3551.27Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHISS3.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIFL3.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIF83.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIB33.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SALAR3.357e-3550.66Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_ECOLI3.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOLC3.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOHS3.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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