DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECODH (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12 / DH10B) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECOBW (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12 / BW2952) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECO8A (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O8 (strain IAI1) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECO55 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain 55989 / EAEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECO45 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECO24 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECO5E (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.385e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ECO57 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O157:H7 GN=msrA PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 4.385e-35
Identity = 79/152 (51.97%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME---AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL VFW  HDP    RQG D GTQYRS IY     Q   AR S+E   A  L   D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_PECCP (Peptide methionine sulfoxide reductase msrA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=msrA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 78/154 (50.65%), Postives = 92/154 (59.74%), Query Frame = 2
Query:  125 PGH-EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            P H   A F  GCFWGVE  F +  G+  T  GY  G  P+P YR VCSG T+H E VRV FDP V  Y  LL +FW  HDP    RQG D+G+QYRS IY     Q + A+ES++  Q  M+   D R I TEI+PA  FY AE+ HQQYL K
Sbjct:   40 PDHMSVAIFAMGCFWGVERLFWQQPGIYSTAAGYIGGYTPNPTYREVCSGQTDHAEAVRVVFDPAVISYDQLLQLFWENHDPAQGMRQGGDIGSQYRSAIYTLTPEQEQAAQESLQRFQQAMREKGDVRAISTEIVPAGPFYYAEDDHQQYLYK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA1_RHOBA (Peptide methionine sulfoxide reductase msrA 1 OS=Rhodopirellula baltica GN=msrA1 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 73/159 (45.91%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  125 PGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQS 601
            PG E A    GCFW  E  F+R+ GV+    GY  G + +PNY+ VC   T H E V++ +DP    +  LL VF+  HDPTTLNRQGAD G QYRS I+ +N+ Q  +A+++ME    E +D   IVT I PA +FY AEEYHQ Y  +    G  Q+
Sbjct:   14 PGEEVATLAGGCFWCTEAVFERMEGVNDVVSGYIGGKIKNPNYKQVCGKMTGHAEAVQIYYDPSKTNFEELLKVFFKTHDPTTLNRQGADGGPQYRSSIFVHNDEQREIAKKTMEKLGEEYRD--PIVTLIEPATKFYVAEEYHQDYYRRNPNAGYCQA 170          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_ECODH3.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOBW3.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO8A3.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO553.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO453.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO243.357e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO5E4.385e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO574.385e-3551.97Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_PECCP5.727e-3550.65Peptide methionine sulfoxide reductase msrA OS=Pec... [more]
MSRA1_RHOBA5.727e-3545.91Peptide methionine sulfoxide reductase msrA 1 OS=R... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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