DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SALA4 (Peptide methionine sulfoxide reductase msrA OS=Salmonella agona (strain SL483) GN=msrA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.842e-34
Identity = 76/152 (50.00%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQ---ARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL  FW  HDPT   +QG D GTQYRS IY     Q   A  +RE  +A      D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQAAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_PHOLL (Peptide methionine sulfoxide reductase msrA OS=Photorhabdus luminescens subsp. laumondii GN=msrA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.842e-34
Identity = 77/166 (46.39%), Postives = 90/166 (54.22%), Query Frame = 2
Query:   86 NPAVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLA---RESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            N AV      P     E A FG GCFWGVE  F +   +  T  GYS G   +P Y  +CSG T H EVVR+ +DP    Y NLL +FW  HDP    RQG D+G+QYRS IY  +  Q  LA   RE  +    +  D R I TEI  A  FY AE+YHQQYL K
Sbjct:   29 NHAVTDHTIEPVPENMEVAYFGMGCFWGVERLFWQQPDIYTTSAGYSGGTTANPTYEEICSGLTGHAEVVRIVYDPAKNSYENLLKLFWENHDPAQGMRQGGDIGSQYRSAIYTVSPQQHELALASREHFQKAMQQQSDNRPITTEITEAGPFYFAEDYHQQYLFK 194          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_CHRVO (Peptide methionine sulfoxide reductase msrA OS=Chromobacterium violaceum GN=msrA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.842e-34
Identity = 71/144 (49.31%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQY 565
            E A  G GCFW +E AF ++ GV +   GY  G+   P+YR VCSG + HVEVV + +DP +  Y  LL VF+  HDPTTLNRQG DVGTQY S I+Y +ETQ   AR  +     E      IVT +  A RF+ AE+YHQ Y
Sbjct:    2 EKAILGGGCFWCLEAAFSQLKGVERVVSGYCGGHTDSPDYRQVCSGDSGHVEVVEISYDPALIDYATLLQVFFAVHDPTTLNRQGHDVGTQYASAIFYLDETQRECARRVIAQLDAEQIFDAPIVTRVESAPRFHPAEDYHQNY 145          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_DICD3 (Peptide methionine sulfoxide reductase msrA OS=Dickeya dadantii (strain 3937) GN=msrA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.712e-34
Identity = 78/154 (50.65%), Postives = 88/154 (57.14%), Query Frame = 2
Query:  125 PGH-EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKD---QRKIVTEILPAKRFYRAEEYHQQYLEK 574
            P H E A F  GCFWGVE  F +  GV  T  GY  G  P+P YR VC+G T H E VRV FDP V  Y  LL +FW  H+P    RQG D+GTQYRS IY     Q   A+ES +  Q  M+D      I TEI PA  FY AE+ HQQYL K
Sbjct:   41 PDHMEVAIFAMGCFWGVERLFWQQPGVYSTASGYCGGYTPNPTYREVCTGKTGHAEAVRVVFDPAVVSYPQLLQLFWENHNPAQGMRQGNDIGTQYRSAIYTLTTEQETAAKESYQRFQQAMRDAGNDHDITTEIQPAGPFYYAEDEHQQYLHK 194          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_CLOB6 (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain 657 / Type Ba4) GN=msrA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.712e-34
Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 2
Query:  155 GCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            GCFWGVE    R+ G+ +T+VGY+ G   +P+Y++VCSGTT H E   +++D  +     LL+ FW   DPT LN+QG D GTQYR+GI+Y NE    +  ES   +Q   K  + IVTE+ P K FY AEEYHQ+YL+K
Sbjct:    9 GCFWGVEEYMSRIKGIVETKVGYANGIKENPSYKVVCSGTTGHAEACYIKYDESIISLEELLNKFWNIIDPTVLNKQGNDRGTQYRTGIFYLNEKDLNIITESKSREQKNYK--KAIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SALTY (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhimurium GN=msrA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.848e-34
Identity = 75/152 (49.34%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQ---ARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL  FW  HDPT   +QG D GTQYRS IY     Q   A  +RE  ++      D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMTAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SALTO (Peptide methionine sulfoxide reductase msrA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=msrA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.848e-34
Identity = 78/160 (48.75%), Postives = 92/160 (57.50%), Query Frame = 2
Query:   95 VGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESME--AKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYL 568
            +G  L  P   G   A FG GCFWG E  F  + GV  T VGY+ G  P+P+Y  VCSG T H EVV V++DP    Y +LL VFW  HDPT   RQG DVGTQYRS IY   + Q   AR S +  A  +    + +I TEI P   +Y AE YHQQYL
Sbjct:   33 LGTPLTGPFPEGTAVAVFGMGCFWGAERLFWTLPGVLTTSVGYAGGYTPNPSYDEVCSGRTGHAEVVHVRYDPTKITYEDLLKVFWENHDPTQGMRQGNDVGTQYRSAIYPTTDEQLTTARASRDAFAPVVARAGKGEITTEISPLGDYYLAEGYHQQYL 192          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SALNS (Peptide methionine sulfoxide reductase msrA OS=Salmonella newport (strain SL254) GN=msrA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.848e-34
Identity = 75/152 (49.34%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQ---ARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL  FW  HDPT   +QG D GTQYRS IY     Q   A  +RE  ++      D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMTAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SALTI (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhi GN=msrA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.331e-34
Identity = 75/152 (49.34%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQ---ARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL  FW  HDPT   +QG D GTQYRS IY     Q   A  +RE  ++      D R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SALSV (Peptide methionine sulfoxide reductase msrA OS=Salmonella schwarzengrund (strain CVM19633) GN=msrA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.331e-34
Identity = 76/152 (50.00%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 GHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMK---DQRKIVTEILPAKRFYRAEEYHQQYLEK 574
            G E A F  GCFWGVE  F ++ GV  T  GY+ G  P+P YR VCSG T H E VR+ +DP V  Y  LL +FW  HDPT   +QG D GTQYRS IY     Q+  A  S E  Q  M    + R I TEI  A  FY AE+ HQQYL K
Sbjct:   42 GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQSAAAHASRERFQSAMAAAGNHRPITTEITHATPFYYAEDEHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_SALA42.842e-3450.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_PHOLL2.842e-3446.39Peptide methionine sulfoxide reductase msrA OS=Pho... [more]
MSRA_CHRVO2.842e-3449.31Peptide methionine sulfoxide reductase msrA OS=Chr... [more]
MSRA_DICD33.712e-3450.65Peptide methionine sulfoxide reductase msrA OS=Dic... [more]
MSRA_CLOB63.712e-3448.57Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_SALTY4.848e-3449.34Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALTO4.848e-3448.75Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALNS4.848e-3449.34Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALTI6.331e-3449.34Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALSV6.331e-3450.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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