DR908331

Overview
NameDR908331
Unique NameDR908331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908331 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 1
Query:   73 GYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 390
            G S    L  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    L      G  +NPA S G A++      W  QW++WVGP IG  +A   ++ +
Sbjct:  137 GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWEWGYQWVYWVGPLIGGGLAGVIYELL 236          
BLAST of DR908331 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 1
Query:   94 LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVI-YNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 393
            L  E++ TF LVYTV++    +RS        +APL IG       LA  P  G  +NPAR+ G A++ +N    W   W++W+GP IGA +A   ++F++
Sbjct:  152 LLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWN----WRHHWVYWLGPLIGAGMAGALYEFVM 244          
BLAST of DR908331 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 1
Query:   73 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 372
            GYS    L  EII T   +  +  +T  +       VPV  AP+ IG A+ ++HL +IP+T T +NPARS G A ++    A    WLFW+ P +G AI A
Sbjct:  126 GYSLLSALLIEIILTAFFLVVILGSTHGR-------VPVGFAPVAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLFWLAPILGGAIGA 218          
The following BLAST results are available for this feature:
BLAST of DR908331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
TIP11_MAIZE5.820e-1137.38Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP32_ORYSJ9.928e-1136.63Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
AQPZ1_AGRT59.928e-1139.60Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16459 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908331 ID=DR908331; Name=DR908331; organism=Citrus sinensis; type=EST; length=664bp
GTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGG
TGGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCG
CCGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCACT
GATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTTGGCACCGCT
CCCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCA
CTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTTAC
AACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTT
CATTGGTGCAGCAATTGCAGCTTTCTACCACCAATTCATCTTGAGAGCTG
GAGCTGTCAAGGCTCTTGGTTCATTCAGGAGCCAATCCCGTGTCTGATTT
TAGTTTCTTCGACAAGTGGATTATCCACATCTTCATGGGGTTAATGATTT
AAAATTGGAAAGAAAAAACTGGGAAGGAGTAGAGGTGTGTTAAGTTTCAA
AAGTGAATAATGAGGGGGGTGTGATTTGTGCTTTCAAGGAGTTGTAGGCA
AAAAGTCTCTTAGACATGAGGGCTTTTTTGTAATCCCCTGTGTTGTTTTC
AAGCACTTTCCTTA
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