DR908330

Overview
NameDR908330
Unique NameDR908330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1_ASHGO (Histone chaperone ASF1 OS=Ashbya gossypii GN=ASF1 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.191e-42
Identity = 81/146 (55.48%), Postives = 109/146 (74.66%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            MS V++  V V++NPA F +P++FEI++ECL PLK DLEWKL YVGS+    +DQ L+S+L GP+ VG  + ++ ADPP    I   +++ VTV+LL+CSY G+EFVRVGYYVNN+YD E+LR +PP K  +D V R ILA+KPRV
Sbjct:    1 MSIVSLLGVKVVNNPAKFTDPYEFEITFECLEPLKHDLEWKLTYVGSSRSLEHDQELDSILGGPIPVGVNQVLVTADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDTEELRNDPPQKVQVDHVVRYILAEKPRV 146          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1_SCHPO (Histone chaperone cia1 OS=Schizosaccharomyces pombe GN=cia1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.868e-39
Identity = 81/152 (53.29%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIRE-EDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPP-----KGLIDRVQRNILADKPRV 613
            MS VNI +V VL+NPA F +P++FEI++ECL PLK DLEWKL YVGSA  ++YDQ+L+++LVGP+ +G  +FV +ADPP+   + +  D++GVTV+LL+C+Y   EFVRVGYYVNN+ +   L+E         K  I +V R+ILA+KPRV
Sbjct:    1 MSIVNILSVNVLNNPAKFSDPYKFEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPNIDLLPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEGLNLQEMDDAEIKKVKVDISKVWRSILAEKPRV 152          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1L_CAEEL (Probable histone chaperone asf-1-like protein OS=Caenorhabditis elegans GN=asfl-1 PE=2 SV=4)

HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37
Identity = 73/145 (50.34%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  179 SAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            S VNI  V +LDNPA F++ F+ EI++E    L  DLEW+L+YVGS     +DQ+L+S LVGP+  G ++FV  A+ PD SKI  EDI+GV+VLLL C Y  QEF+ +G++V N+Y DE+L+E PP K LI+++ R I  +  RV
Sbjct:    3 SRVNIVQVQILDNPAMFVDKFKMEITFEVFEHLPHDLEWELVYVGSGTSRDFDQVLDSALVGPIPEGRHKFVFDAEHPDISKIPVEDIVGVSVLLLRCKYNDQEFINMGWFVANEYTDEELKENPPAKPLIEKLSRKIETEDLRV 147          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1_CAEEL (Probable histone chaperone asf-1 OS=Caenorhabditis elegans GN=asf-1 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.228e-36
Identity = 69/145 (47.59%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  179 SAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            S VNI  V +LDNPA F++ F+ EI++E    L  DLEW+L+YVGS     +DQ+L+S LVGP+  G ++FV  AD PD SKI  +DI+GV+VLLL C Y  QEF+ +G++V N+Y +E+L+E PP + LI+++ R +  +  R+
Sbjct:    3 SRVNIVQVQILDNPAMFVDKFKLEITFEVFEHLPHDLEWELVYVGSGTSRDFDQVLDSALVGPIPEGRHKFVFDADHPDISKIPVDDIVGVSVLLLRCKYNDQEFINMGWFVANEYTEEELKENPPSQPLIEKLSRKVETEDLRI 147          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1_CRYNE (Histone chaperone ASF1 OS=Cryptococcus neoformans GN=ASF1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.090e-33
Identity = 71/152 (46.71%), Postives = 102/152 (67.11%), Query Frame = 2
Query:  185 VNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD----PSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRVQSSQS 628
            VNI N+ +L+NPA F +P+ F I +E + PL +DL+W+LIYVGSA  E +DQ L++  VGP+  G   F   A  P     PS +  ++I+GVTV+++T SY  +EFVRVGYYVN  Y+DE+L+E PP     D++ RN+L +KP+V   Q+
Sbjct:    2 VNIRNIELLNNPAKFDDPYNFRIKFEAIAPLVEDLDWRLIYVGSASSEEFDQELDNCSVGPIPAGINAFDFSAPAPAHHLLPS-VEPDEILGVTVIIITASYREKEFVRVGYYVNTYYEDEELKENPPSVVQWDKLHRNVLIEKPKVTRFQN 152          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1_ENCCU (Histone chaperone ASF1 OS=Encephalitozoon cuniculi GN=ASF1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 31/98 (31.63%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  233 NPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDY 526
            +P +F + + C   +K  +E+ ++Y      +  DQ+L  + V P+  G   F + AD PD +KI  +++ G+T +L+   Y GQ+F+R+GY V+  Y
Sbjct:   20 DPLKFNLRFVCFEEIKCGVEFVVLYNMDVHSDENDQVLAEIEVAPIPKGKIEFSIDADAPDVNKIPLDEMFGLTSILIVGRYKGQQFIRIGYIVDVGY 117          
The following BLAST results are available for this feature:
BLAST of DR908330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ASF1_ASHGO2.191e-4255.48Histone chaperone ASF1 OS=Ashbya gossypii GN=ASF1 ... [more]
ASF1_SCHPO3.868e-3953.29Histone chaperone cia1 OS=Schizosaccharomyces pomb... [more]
ASF1L_CAEEL4.728e-3750.34Probable histone chaperone asf-1-like protein OS=C... [more]
ASF1_CAEEL5.228e-3647.59Probable histone chaperone asf-1 OS=Caenorhabditis... [more]
ASF1_CRYNE1.090e-3346.71Histone chaperone ASF1 OS=Cryptococcus neoformans ... [more]
ASF1_ENCCU1.532e-1131.63Histone chaperone ASF1 OS=Encephalitozoon cuniculi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16458 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-18_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908330 ID=DR908330; Name=DR908330; organism=Citrus sinensis; type=EST; length=664bp
TCAACCGTCCTTTGCACCGCCATTTCCCAGTCACCGTTTCTCCTCCTCGA
AGACTCTATTTCGCCTTTCGCCTCTAGCCTCTAGGGTTTCTGATTTCTTC
GATGAAGGATATCGAATCCAGGAATAGAGCCAATCAATCCACGGAATCAT
CAGAATCCTGTTCTAACTCAAGACTATGAGCGCCGTAAATATCACAAACG
TCACCGTTTTAGATAACCCTGCTGCGTTTCTCAATCCGTTTCAGTTCGAA
ATCTCGTACGAGTGTTTGACCCCTCTTAAAGACGACTTGGAATGGAAACT
CATTTATGTGGGATCTGCTGAGGATGAGACTTATGATCAACTGCTAGAAA
GTGTGCTTGTTGGTCCTGTTAATGTTGGTAACTACCGTTTTGTCTTACAG
GCAGACCCTCCGGACCCATCAAAAATCCGTGAAGAGGATATAATTGGTGT
CACTGTACTGCTTTTAACATGTTCTTATATAGGACAGGAATTTGTTCGAG
TGGGGTATTACGTGAACAATGATTATGATGACGAGCAGCTAAGAGAGGAG
CCTCCTCCAAAGGGTTTGATAGATAGAGTTCAAAGAAACATATTAGCTGA
CAAGCCTAGAGTCCAAAGTTCCCAATCAATTTTCATCCTGAGAACAATGA
GCATGGAGAGGACA
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