DR908324

Overview
NameDR908324
Unique NameDR908324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.000e-11
Identity = 32/90 (35.56%), Postives = 43/90 (47.78%), Query Frame = 2
Query:    2 LLHQLSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 271
            L +++   DL  +    +LP   A                ++  C VC   FE      EMPC H++H +CILPWL   NSCP+CR ELP
Sbjct:   44 LFNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 133          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 2
Query:  122 SECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 271
            +E  C VC   FE    A EMPC H++H +CILPWL   NSCP+CR ELP
Sbjct:   72 AELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 121          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 33/90 (36.67%), Postives = 43/90 (47.78%), Query Frame = 2
Query:    2 LLHQLSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 271
            L +++   DL  +    +LP   A                +E  C VC   FE      EMPC H++H +CILPWL   NSCP+CR ELP
Sbjct:   44 LFNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 133          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 28/50 (56.00%), Postives = 32/50 (64.00%), Query Frame = 2
Query:  122 SECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 271
            +E  C VC   FE    A EMPC H++H  CILPWL   NSCP+CR ELP
Sbjct:   72 AELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELP 121          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 2
Query:  125 ECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 268
            +  C+VCKE  E G   R +PCKH +HE+CIL WLK  NSCP+CR EL
Sbjct:   67 DLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYEL 114          
The following BLAST results are available for this feature:
BLAST of DR908324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RN181_MOUSE2.000e-1135.56E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN181_BOVIN2.613e-1156.00E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
RN181_RAT4.457e-1136.67E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_HUMAN4.457e-1156.00E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]
RN181_DROME5.820e-1158.33E3 ubiquitin-protein ligase CG7694 OS=Drosophila m... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16452 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908324 ID=DR908324; Name=DR908324; organism=Citrus sinensis; type=EST; length=666bp
GTTGCTTCATCAACTGTCTCAGATTGATCTAACGGCGCTATCCCGGCCGG
AGAATCTGCCGGCATCAAAAGCTTCGATCGAGTCGATGCCAAGCATAGAG
ATTTCGTCAGGCCACGTAAGTTCAGAGTGTCACTGTGCGGTATGTAAAGA
GGCGTTTGAGCTTGGAAACGTGGCGAGAGAGATGCCGTGCAAGCATATAT
ACCATGAAGATTGTATTCTCCCGTGGCTCAAAATGCGAAACTCGTGCCCC
GTTTGCAGGCAAGAGCTACCAGCAGCCGCAGCCGCAGCCACAGAAGAATC
GTCGATGGCGCTGTCTATATGGTGGCTGCCGGGAGGTGGGTTTGCAGTGG
GAAGATATGAGGGCCGGAGAGTGCTGGCCGGAGCCGCAGAGAGAGGGTTA
TCAATTGAGTTTGCTGATAATATGGATAATCAAACTAGCAGTAGCAGGGT
TTTTCCTCAAAGAAGGGTTGGTGGATTTTTTAGGGTTTTTCGTGGATTTG
GATCCATTTTCAGGAGGTTTAGGGGTACCAGTTCACGTTCTTCTCATTAT
CAAACTCATCACGTTCAACAGTCTGATCGTCCAAGTATTGTTTGAAAATT
TAATTCGGGGATGATTTTTAATCTTAGGAGTCACATATTTTAATTATATA
TTATTCATTTTTGTAT
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